File Changes for mspeir

v322_base to v323_preview (2015-09-14 to 2015-09-21) v323

• src/hg/htdocs/FAQ/FAQblat.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/FAQ/FAQcite.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/FAQ/FAQcustom.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/FAQ/FAQdisplay.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/FAQ/FAQdownloads.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/FAQ/FAQformat.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/FAQ/FAQlicense.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/FAQ/FAQlink.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/FAQ/FAQmaillist.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/FAQ/FAQreleases.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/FAQ/FAQtables.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/FAQ/FAQtracks.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/FAQ/index.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/Neandertal/index.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/admin/403.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/admin/404.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/admin/500.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/admin/cvs.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/admin/git.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/admin/index.html
  • lines changed 4, context: html, text, full: html, text
    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/admin/jk-install.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/admin/mirror.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/cite.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/conditions.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/contacts.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/certificates/certificate_hg15.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/certificates/certificate_hg16.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/certificates/index.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/credits.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/datorg.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/gbdDescriptions.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/gbdDescriptionsOld.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/axt.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/bam.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/bedgraph.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/bigBed.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/bigGenePred.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/bigWig.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/blatSpec.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/chain.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/chimera.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/customColumn.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/customTrack.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/fileSearch.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/ftp.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/gbib.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/geneSearchBox.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/genomeEuro.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/haplotypes.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/hg18ToHg19LiftOver.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/hgBamTrackHelp.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/hgBaseLabel.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/hgCodonColoring.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/hgCodonColoringMrna.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/hgGenomeHelp.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/hgIndelDisplay.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/hgIntegratorHelp.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/hgNearHelp.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/hgRegMotifHelp.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/hgSessionHelp.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/hgTablesHelp.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/hgTextHelp.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/hgTracksHelp.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/hgVcfTrackHelp.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/hgWiggleTrackHelp.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/hubQuickStart.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/hubQuickStartAssembly.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/hubQuickStartGroups.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/image.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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    Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
    
• src/hg/htdocs/goldenPath/help/index.html
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    Removing unnecessary includes now that hgMenuBar exists, refs #15389
    
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• src/hg/htdocs/goldenPath/help/iupac.html
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• src/hg/htdocs/goldenPath/help/multiView.html
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• src/hg/htdocs/goldenPath/help/mysql.html
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• src/hg/htdocs/goldenPath/help/net.html
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• src/hg/htdocs/goldenPath/help/phastCons.html
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• src/hg/htdocs/goldenPath/help/qValue.html
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• src/hg/htdocs/goldenPath/help/query.html
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• src/hg/htdocs/goldenPath/help/sessions.html
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• src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html
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• src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v0.html
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• src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v1.html
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• src/hg/htdocs/goldenPath/help/trackDescriptions.html
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• src/hg/htdocs/goldenPath/help/trackSearch.html
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• src/hg/htdocs/goldenPath/help/trix.html
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• src/hg/htdocs/goldenPath/help/twoBit.html
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• src/hg/htdocs/goldenPath/help/vcf.html
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• src/hg/htdocs/goldenPath/help/wiggle.html
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• src/hg/htdocs/goldenPath/hgText.html
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• src/hg/htdocs/goldenPath/hgTracks.html
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• src/hg/htdocs/goldenPath/labs.html
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• src/hg/htdocs/goldenPath/mapPlots/RHguide.html
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• src/hg/htdocs/goldenPath/newsarch.html
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• src/hg/htdocs/goldenPath/pubs.html
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• src/hg/htdocs/goldenPath/stats.html
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• src/hg/htdocs/index.html
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• src/hg/htdocs/jobs.html
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• src/hg/htdocs/kc.html
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• src/hg/htdocs/knownIssues.html
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• src/hg/htdocs/license/index.html
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• src/hg/htdocs/mirror.html
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• src/hg/htdocs/staff.html
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• src/hg/htdocs/template.html
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• src/hg/htdocs/training/index.html
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• src/hg/htdocs/training/trainingMap.html
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• src/hg/htdocs/training/vids/index.html
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• src/hg/htdocs/util.html
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• src/hg/makeDb/schema/all.joiner
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• src/hg/makeDb/trackDb/anopheles/anoGam1/anoEstNcl.html
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• src/hg/makeDb/trackDb/anopheles/anoGam1/anoEstTcl.html
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• src/hg/makeDb/trackDb/contrastGene.html
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• src/hg/makeDb/trackDb/ferret/musFur1/description.html
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• src/hg/makeDb/trackDb/human/hg38/defaultPriority.ra
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• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
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• src/hg/makeDb/trackDb/marmoset/calJac3/bacEnds.html
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• src/hg/makeDb/trackDb/mgcFullMrna.html
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• src/hg/makeDb/trackDb/mouse/trackDb.ra
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• src/hg/makeDb/trackDb/pubs.html
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• src/hg/makeDb/trackDb/shrew/sorAra2/description.html
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• src/hg/makeDb/trackDb/wallaby/macEug2/description.html
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• src/hg/makeDb/trackDb/zebrafish/UMassChIP-Seq.html
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