Commits for mspeir

v322_base to v323_preview (2015-09-14 to 2015-09-21) v323

• Updating links on A gambiae track description pages
  
  • src/hg/makeDb/trackDb/anopheles/anoGam1/anoEstNcl.html - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/anopheles/anoGam1/anoEstTcl.html - lines changed 13, context: html, text, full: html, text
• Updating links on marmoset (calJac3) track description page
  
  • src/hg/makeDb/trackDb/marmoset/calJac3/bacEnds.html - lines changed 2, context: html, text, full: html, text
• Updating links on rat (rn4) track description pages
  
  • src/hg/makeDb/trackDb/contrastGene.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mgcFullMrna.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/pubs.html - lines changed 1, context: html, text, full: html, text
• Changing link on zebrafish (danRer5) track description page
  
  • src/hg/makeDb/trackDb/zebrafish/UMassChIP-Seq.html - lines changed 1, context: html, text, full: html, text
• Updating hgc links for mouse IKMC Genes track
  
  • src/hg/makeDb/trackDb/mouse/trackDb.ra - lines changed 2, context: html, text, full: html, text
• Updates to various assembly gateway description pages
  
  • src/hg/makeDb/trackDb/ferret/musFur1/description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/shrew/sorAra2/description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/wallaby/macEug2/description.html - lines changed 1, context: html, text, full: html, text
• Turning off some hg38 default tracks
  
  • src/hg/makeDb/trackDb/human/hg38/defaultPriority.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 5, context: html, text, full: html, text
• Turning off stsMap by default
  
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 3, context: html, text, full: html, text
• Adding tablesIgnored entries for cnvDevDelay track, refs #9391
  
  • src/hg/makeDb/schema/all.joiner - lines changed 1, context: html, text, full: html, text
• Removing unnecessary includes now that hgMenuBar exists, refs #15389
  
  • src/hg/htdocs/FAQ/FAQblat.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/FAQ/FAQcite.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/FAQ/FAQcustom.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/FAQ/FAQdisplay.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/FAQ/FAQdownloads.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/FAQ/FAQformat.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/FAQ/FAQlicense.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/FAQ/FAQlink.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/FAQ/FAQmaillist.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/FAQ/FAQreleases.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/FAQ/FAQtables.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/FAQ/FAQtracks.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/FAQ/index.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/Neandertal/index.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/admin/403.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/admin/404.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/admin/500.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/admin/cvs.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/admin/git.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/admin/index.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/admin/jk-install.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/admin/mirror.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/cite.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/conditions.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/contacts.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/certificates/certificate_hg15.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/certificates/certificate_hg16.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/certificates/index.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/credits.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/datorg.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/gbdDescriptions.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/gbdDescriptionsOld.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/axt.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/bam.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/bedgraph.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/bigBed.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/bigGenePred.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/bigWig.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/blatSpec.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/chain.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/chimera.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/customColumn.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/customTrack.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/fileSearch.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/ftp.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/gbib.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/geneSearchBox.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/genomeEuro.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/haplotypes.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hg18ToHg19LiftOver.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgBamTrackHelp.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgBaseLabel.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgCodonColoring.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgCodonColoringMrna.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgGenomeHelp.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgIndelDisplay.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgIntegratorHelp.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgNearHelp.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgRegMotifHelp.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgSessionHelp.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgTablesHelp.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgTextHelp.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgTracksHelp.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgVcfTrackHelp.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgWiggleTrackHelp.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hubQuickStart.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hubQuickStartAssembly.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hubQuickStartGroups.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/image.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/index.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/iupac.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/liftOver.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/multiView.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/mysql.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/net.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/phastCons.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/qValue.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/query.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/sessions.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v0.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v1.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDescriptions.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackSearch.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trix.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/twoBit.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/vcf.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/wiggle.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/hgText.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/hgTracks.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/labs.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/mapPlots/RHguide.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/pubs.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/stats.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/index.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/jobs.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/kc.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/knownIssues.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/license/index.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/mirror.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/staff.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/template.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/training/index.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/training/trainingMap.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/training/vids/index.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/util.html - lines changed 4, context: html, text, full: html, text
• Ack. Didn't notice that I changed permissions of all those files. Reversing accidental permissions change in last commit, refs #15389
  
  • src/hg/htdocs/FAQ/FAQblat.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/FAQ/FAQcite.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/FAQ/FAQcustom.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/FAQ/FAQdisplay.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/FAQ/FAQdownloads.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/FAQ/FAQformat.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/FAQ/FAQlicense.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/FAQ/FAQlink.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/FAQ/FAQmaillist.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/FAQ/FAQreleases.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/FAQ/FAQtables.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/FAQ/FAQtracks.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/FAQ/index.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/Neandertal/index.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/admin/403.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/admin/404.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/admin/500.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/admin/cvs.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/admin/git.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/admin/index.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/admin/jk-install.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/admin/mirror.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/cite.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/conditions.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/contacts.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/certificates/certificate_hg15.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/certificates/certificate_hg16.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/certificates/index.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/credits.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/datorg.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/gbdDescriptions.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/gbdDescriptionsOld.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/help/axt.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/help/bam.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/help/bedgraph.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/help/bigBed.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/help/bigGenePred.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/help/bigWig.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/help/blatSpec.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/help/chain.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/help/chimera.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
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  • src/hg/htdocs/goldenPath/help/customTrack.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/help/fileSearch.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/help/ftp.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/help/gbib.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
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  • src/hg/htdocs/goldenPath/help/genomeEuro.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/help/haplotypes.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/help/hg18ToHg19LiftOver.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
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  • src/hg/htdocs/goldenPath/help/hgCodonColoringMrna.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/help/hgGenomeHelp.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/help/hgIndelDisplay.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/help/hgIntegratorHelp.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
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  • src/hg/htdocs/goldenPath/help/hgRegMotifHelp.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/help/hgSessionHelp.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
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  • src/hg/htdocs/goldenPath/help/hgTracksHelp.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/help/hgVcfTrackHelp.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/goldenPath/help/hgWiggleTrackHelp.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
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