File Changes for hiram

v327_preview2 to v327_base (2016-01-04 to 2016-01-11) v327

• src/hg/inc/versionInfo.h
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    New version number v327
    
• src/hg/makeDb/doc/ci2.txt
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    ci2 to ci3 liftOver for ci3 browser release refs #16628
    
• src/hg/makeDb/doc/ci3/initialBuild.txt
  • lines changed 471, context: html, text, full: html, text
    in the pushQ refs #16628
    
• src/hg/makeDb/schema/all.joiner
  • lines changed 3, context: html, text, full: html, text
    clean joinerCheck on ci3 refs #16628
    
• src/hg/utils/automation/blastz-normalizeLav
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    /bin/env is only on centOS more generic and widely available is /usr/bin/env no redmine
    
• src/hg/utils/automation/blastz-run-ucsc
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    /bin/env is only on centOS more generic and widely available is /usr/bin/env no redmine
    
• src/hg/utils/automation/constructLiftFile.pl
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    /bin/env is only on centOS more generic and widely available is /usr/bin/env no redmine
    
• src/hg/utils/automation/genbank/alternatesAgp.pl
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    /bin/env is only on centOS more generic and widely available is /usr/bin/env no redmine
    
• src/hg/utils/automation/genbank/compositeAgp.pl
  • lines changed 1, context: html, text, full: html, text
    /bin/env is only on centOS more generic and widely available is /usr/bin/env no redmine
    
• src/hg/utils/automation/genbank/compositeFasta.pl
  • lines changed 1, context: html, text, full: html, text
    /bin/env is only on centOS more generic and widely available is /usr/bin/env no redmine
    
• src/hg/utils/automation/genbank/gatewayPage.js
  • lines changed 26, context: html, text, full: html, text
    fixups for code review refs #16589
    
• src/hg/utils/automation/genbank/gatewayPage.pl
  • lines changed 3, context: html, text, full: html, text
    fixups for code review refs #16589
    
• src/hg/utils/automation/genbank/ncbiToUcsc.sh
  • lines changed 5, context: html, text, full: html, text
    fixups for code review refs #16589
    
• src/hg/utils/automation/genbank/noStructureAgp.pl
  • lines changed 1, context: html, text, full: html, text
    /bin/env is only on centOS more generic and widely available is /usr/bin/env no redmine
    
• src/hg/utils/automation/genbank/noStructureFasta.pl
  • lines changed 1, context: html, text, full: html, text
    /bin/env is only on centOS more generic and widely available is /usr/bin/env no redmine
    
• src/hg/utils/automation/genbank/sorttable.js
  • lines changed 495, context: html, text, full: html, text
    fixups for code review refs #16589
    
• src/hg/utils/automation/genbank/unlocalizedAgp.pl
  • lines changed 1, context: html, text, full: html, text
    /bin/env is only on centOS more generic and widely available is /usr/bin/env no redmine
    
• src/hg/utils/automation/genbank/unlocalizedFasta.pl
  • lines changed 1, context: html, text, full: html, text
    /bin/env is only on centOS more generic and widely available is /usr/bin/env no redmine
    
• src/hg/utils/automation/genbank/unplacedAgp.pl
  • lines changed 1, context: html, text, full: html, text
    /bin/env is only on centOS more generic and widely available is /usr/bin/env no redmine
    
• src/hg/utils/automation/genbank/unplacedFasta.pl
  • lines changed 1, context: html, text, full: html, text
    /bin/env is only on centOS more generic and widely available is /usr/bin/env no redmine
    
• src/hg/utils/automation/grcIncidentDb.pl
  • lines changed 2, context: html, text, full: html, text
    /bin/env is only on centOS more generic and widely available is /usr/bin/env no redmine
    
• src/hg/utils/automation/gwUploadFile
  • lines changed 1, context: html, text, full: html, text
    /bin/env is only on centOS more generic and widely available is /usr/bin/env no redmine
    
• src/hg/utils/automation/ucscCompositeAgp.pl
  • lines changed 1, context: html, text, full: html, text
    /bin/env is only on centOS more generic and widely available is /usr/bin/env no redmine
    
• src/hg/utils/automation/unplacedWithChroms.pl
  • lines changed 1, context: html, text, full: html, text
    /bin/env is only on centOS more generic and widely available is /usr/bin/env no redmine
    
• src/hg/utils/makefile
  • lines changed 2, context: html, text, full: html, text
    adding bigPslToPsl and pslToBigPsl to the utils build refs #15067
    
• src/product/ex.hg.conf
  • lines changed 4, context: html, text, full: html, text
    add documentation about the trackLog option refs #16617
    
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 3, context: html, text, full: html, text
    v327 final build refs #16513
    
• src/utils/twoBitDup/twoBitDup.c
  • lines changed 14, context: html, text, full: html, text
    usefult to have the unique keys in hand to compare two genome assemblies refs #16589