Commits for hiram

v327_preview2 to v327_base (2016-01-04 to 2016-01-11) v327

• adding bigPslToPsl and pslToBigPsl to the utils build refs #15067
  
  • src/hg/utils/makefile - lines changed 2, context: html, text, full: html, text
• fixups for code review refs #16589
  
  • src/hg/utils/automation/genbank/gatewayPage.js - lines changed 26, context: html, text, full: html, text
  • src/hg/utils/automation/genbank/gatewayPage.pl - lines changed 3, context: html, text, full: html, text
  • src/hg/utils/automation/genbank/ncbiToUcsc.sh - lines changed 5, context: html, text, full: html, text
  • src/hg/utils/automation/genbank/sorttable.js - lines changed 495, context: html, text, full: html, text
• add documentation about the trackLog option refs #16617
  
  • src/product/ex.hg.conf - lines changed 4, context: html, text, full: html, text
• usefult to have the unique keys in hand to compare two genome assemblies refs #16589
  
  • src/utils/twoBitDup/twoBitDup.c - lines changed 14, context: html, text, full: html, text
• clean joinerCheck on ci3 refs #16628
  
  • src/hg/makeDb/schema/all.joiner - lines changed 3, context: html, text, full: html, text
• ci2 to ci3 liftOver for ci3 browser release refs #16628
  
  • src/hg/makeDb/doc/ci2.txt - lines changed 32, context: html, text, full: html, text
• in the pushQ refs #16628
  
  • src/hg/makeDb/doc/ci3/initialBuild.txt - lines changed 471, context: html, text, full: html, text
• /bin/env is only on centOS more generic and widely available is /usr/bin/env no redmine
  
  • src/hg/utils/automation/blastz-normalizeLav - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/automation/blastz-run-ucsc - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/automation/constructLiftFile.pl - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/automation/grcIncidentDb.pl - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/automation/gwUploadFile - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/automation/ucscCompositeAgp.pl - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/automation/unplacedWithChroms.pl - lines changed 1, context: html, text, full: html, text
• /bin/env is only on centOS more generic and widely available is /usr/bin/env no redmine
  
  • src/hg/utils/automation/genbank/alternatesAgp.pl - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/automation/genbank/compositeAgp.pl - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/automation/genbank/compositeFasta.pl - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/automation/genbank/noStructureAgp.pl - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/automation/genbank/noStructureFasta.pl - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/automation/genbank/unlocalizedAgp.pl - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/automation/genbank/unlocalizedFasta.pl - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/automation/genbank/unplacedAgp.pl - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/automation/genbank/unplacedFasta.pl - lines changed 1, context: html, text, full: html, text
• v327 final build refs #16513
  
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text
• New version number v327
  
  • src/hg/inc/versionInfo.h - lines changed 1, context: html, text, full: html, text