Commits for hiram

v326_base to v327_preview (2015-12-07 to 2015-12-14) v327

• xenTro should be before latCha refs #9868
  
  • src/hg/makeDb/trackDb/human/chainNetVertebrate.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/chainNetXenTro3.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/chainNetXenTro7.ra - lines changed 3, context: html, text, full: html, text
• remove obsolete commented out variables, no longer usable refs #1612
  
  • src/hg/hgTracks/imageV2.h - lines changed 4, context: html, text, full: html, text
• photo from NHGRI 79122 public rights refs no redmine
  
  • src/hg/htdocs/images/Oxytricha_trifallax.jpg - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• adding oxyTri2 to the build refs no redmine
  
  • src/hg/makeDb/trackDb/ciliate/oxyTri2/description.html - lines changed 63, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ciliate/oxyTri2/gap.html - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ciliate/oxyTri2/gold.html - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ciliate/oxyTri2/trackDb.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
• updated with references to papers and explination of chrom constructon refs no redmine
  
  • src/hg/makeDb/trackDb/ciliate/oxyTri2/description.html - lines changed 48, context: html, text, full: html, text
• overrides for default visibilities refs no redmine
  
  • src/hg/makeDb/trackDb/ciliate/oxyTri2/trackDb.ra - lines changed 6, context: html, text, full: html, text
• default vis full for rmsk refs no redmine
  
  • src/hg/makeDb/trackDb/ciliate/oxyTri2/trackDb.ra - lines changed 3, context: html, text, full: html, text
• Added oxyTri2 Oxytricha trifallax refs no redmine
  
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/lib/gbGenome.c - lines changed 2, context: html, text, full: html, text
• missing oxyTri2.refseq.mrna.native.pslCDnaFilter refs no redmine
  
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 1, context: html, text, full: html, text
• adding oxyTri2 refs no redmine
  
  • src/hg/makeDb/schema/all.joiner - lines changed 9, context: html, text, full: html, text
• fixup gcc warnings for -Wunused-but-set-variable refs #16121
  
  • src/hg/makeDb/genbank/src/extFileUpdate/raInfoTbl.c - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/gbSanity/chkMetaDataTbls.c - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/repair/refPepRepair.c - lines changed 3, context: html, text, full: html, text
• Added oxyTri2 - Oxytricha trifallax refs no redmine
  
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
• adding chainSelf refs no redmine
  
  • src/hg/makeDb/trackDb/ciliate/oxyTri2/trackDb.ra - lines changed 11, context: html, text, full: html, text