Commits for galt
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v328_preview2 to v328_base (2016-01-25 to 2016-02-08) v328
- Fixes #16721. Bug in order of operations employed with user supplied position where start > end, causes both the start and end coordinates to be off by 1. Fixed by just doing the coordinate swap before decrementing the start by 1.
- Fixes #16708. ORDER BY is needed for all genePreds except knownGene since the index is defined for chrom+bin key rather than simply chrom or chrom+start. This should only add a small amount of overhead.
- src/hg/hgTracks/hgTracks.c - lines changed 1, context: html, text, full: html, text
- Fixing typo in description
- src/hg/makeDb/hgLoadGenePred/hgLoadGenePred.c - lines changed 2, context: html, text, full: html, text
- Requested changes to multi-region config see # 16666 note 21
- src/hg/hgTracks/config.c - lines changed 15, context: html, text, full: html, text
- src/hg/hgTracks/hgTracks.c - lines changed 11, context: html, text, full: html, text
- src/hg/hgTracks/hgTracks.h - lines changed 1, context: html, text, full: html, text
- src/hg/hgTracks/simpleTracks.c - lines changed 1, context: html, text, full: html, text
- A request was made to hide the chromIdeo when we are in custom multi-region mode
and ther is more than two or more different chroms in the region list.
This is kind of a compromise. It avoids the seeming asserting that there is just
one chrom in the view. But we also lose our place-holder that shows
the multi-region mode that one is in. When a user zooms in far enough
that the screen only has 1 window from 1 region, then the chromIdeo for that single
chrom needs to be updated. So I have added a small change where when the
ideo is hidden we still include an empty hidden map and chromIdeo image html.
So that hgTracks.js::updateChromImg can update it later at runtime with ajax callbacks.
This is also a partial step towards supporting multiple chromIdeos someday.
Squashed commit of the following:
commit 764c2932d6be67d6a67b3df47b8cf44f3c5239e4
Author: Galt Barber <galt@soe.ucsc.edu>
Date: Fri Jan 29 19:11:53 2016 -0800
code cleanup
commit 408ee8dadde6d7948740a65e0a298ad006470ab7
Author: Galt Barber <galt@soe.ucsc.edu>
Date: Fri Jan 29 18:37:47 2016 -0800
checkin of fix for more dynamic ideogram
commit ccac0a2f112dabd6e798904bd57b0cb5fe7c0a22
Author: Galt Barber <galt@soe.ucsc.edu>
Date: Thu Jan 28 11:29:33 2016 -0800
initial probing towards a solution for having dynmaic chromIdeos, a step on the way to supporting mulitple chromIdeos
- src/hg/hgTracks/hgTracks.c - lines changed 46, context: html, text, full: html, text
- Fixes #16756. It needed the position to be disguised in the code-path where the disbleHighlightingDialog is checked in hgTracks.js.
- added code to verify that for BED input data the chrom exists in the database and that chromEnd is not > chrom size.
- src/hg/hgTracks/hgTracks.c - lines changed 13, context: html, text, full: html, text
- Currently, disable the haplotype sorting display when multiple windows are found.
- src/hg/hgTracks/vcfTrack.c - lines changed 4, context: html, text, full: html, text
- False dependency on wiggle.h removed
- src/hg/hgTracks/wigMafTrack.c - lines changed 1, context: html, text, full: html, text
- Issue 16666. Makes autoscale work with multi-region for wig, bedGraph, bigWig, and multiWig. doWiggle still TODO.
- src/hg/hgTracks/bamTrack.c - lines changed 15, context: html, text, full: html, text
- src/hg/hgTracks/bedGraph.c - lines changed 17, context: html, text, full: html, text
- src/hg/hgTracks/bigWigTrack.c - lines changed 17, context: html, text, full: html, text
- src/hg/hgTracks/hgTracks.c - lines changed 46, context: html, text, full: html, text
- src/hg/hgTracks/hgTracks.h - lines changed 8, context: html, text, full: html, text
- src/hg/hgTracks/multiWig.c - lines changed 127, context: html, text, full: html, text
- src/hg/hgTracks/simpleTracks.c - lines changed 3, context: html, text, full: html, text
- src/hg/hgTracks/wigCommon.h - lines changed 12, context: html, text, full: html, text
- src/hg/hgTracks/wigTrack.c - lines changed 75, context: html, text, full: html, text
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