File Changes for hiram

v328_preview2 to v328_base (2016-01-25 to 2016-02-08) v328

• src/hg/hgc/hgc.c
  • lines changed 74, context: html, text, full: html, text
    first pass as display of metadata for NCBI RefSeq track, needs improvement refs #13673
    
  • lines changed 146, context: html, text, full: html, text
    improving formatting of ncbiRefSeq click data refs #13673
    
  • lines changed 33, context: html, text, full: html, text
    remove Brian_s prNcbiRefGeneInfo business refs #13673
    
  • lines changed 49, context: html, text, full: html, text
    formatting page for ncbiRefSeq refs #13673
    
  • lines changed 18, context: html, text, full: html, text
    trying to get the psl alignment to display refs #13673
    
• src/hg/inc/ncbiRefSeqLink.h
  • lines changed 80, context: html, text, full: html, text
    first pass as display of metadata for NCBI RefSeq track, needs improvement refs #13673
    
• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    New version number v328
    
• src/hg/lib/makefile
  • lines changed 3, context: html, text, full: html, text
    adding ncbiRefSeqLink.c to the build refs #13673
    
• src/hg/lib/ncbiRefSeqLink.as
  • lines changed 22, context: html, text, full: html, text
    first pass as display of metadata for NCBI RefSeq track, needs improvement refs #13673
    
• src/hg/lib/ncbiRefSeqLink.c
  • lines changed 254, context: html, text, full: html, text
    first pass as display of metadata for NCBI RefSeq track, needs improvement refs #13673
    
• src/hg/lib/ncbiRefSeqLink.sql
  • lines changed 28, context: html, text, full: html, text
    first pass as display of metadata for NCBI RefSeq track, needs improvement refs #13673
    
• src/hg/makeDb/doc/ce11/initialBuild.txt
  • lines changed 11, context: html, text, full: html, text
    adding microsat track refs #15209
    
• src/hg/makeDb/doc/rheMac8/initialBuild.txt
  • lines changed 660, context: html, text, full: html, text
    initial files done, repeat masking done, starting genbank refs #16744
    
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 19, context: html, text, full: html, text
    Added rheMac8; refs #16744
    
  • lines changed 1, context: html, text, full: html, text
    Added rheMac8; refs #16744
    
• src/hg/makeDb/schema/all.joiner
  • lines changed 10, context: html, text, full: html, text
    join the NCBI RefSeq track tables refs #13673
    
• src/hg/makeDb/trackDb/makefile
  • lines changed 1, context: html, text, full: html, text
    adding rheMac8 refs #16744
    
• src/hg/makeDb/trackDb/rhesus/rheMac8/description.html
  • lines changed 63, context: html, text, full: html, text
    initial files from makeGenomeDb.pl refs #16744
    
• src/hg/makeDb/trackDb/rhesus/rheMac8/gap.html
  • lines changed 32, context: html, text, full: html, text
    initial files from makeGenomeDb.pl refs #16744
    
• src/hg/makeDb/trackDb/rhesus/rheMac8/gold.html
  • lines changed 35, context: html, text, full: html, text
    initial files from makeGenomeDb.pl refs #16744
    
• src/hg/makeDb/trackDb/rhesus/rheMac8/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    initial files from makeGenomeDb.pl refs #16744
    
• src/hg/makeDb/trackDb/trackDb.genbank.new.ra
  • lines changed 10, context: html, text, full: html, text
    subsume existing UCSC refseq track into ncbi refseq composite refs #13673
    
• src/hg/makeDb/trackDb/trackDb.ra
  • lines changed 18, context: html, text, full: html, text
    testing NCBI RefSeq track refs #13673
    
  • lines changed 8, context: html, text, full: html, text
    testing NCBI RefSeq track refs #13673
    
  • lines changed 10, context: html, text, full: html, text
    labels on ncbiRefSeqBigPsl track refs #13673
    
  • lines changed 54, context: html, text, full: html, text
    remove Brian_s ncbiRefGene definitions refs #13673
    
  • lines changed 24, context: html, text, full: html, text
    trying to get the psl alignment to display refs #13673
    
  • lines changed 67, context: html, text, full: html, text
    subsume existing UCSC refseq track into ncbi refseq composite refs #13673
    
• src/hg/utils/automation/doNcbiRefSeq.pl
  • lines changed 280, context: html, text, full: html, text
    working up script for NCBI RefSeq gene track processing refs #13673
    
• src/hg/utils/automation/gff3ToRefLink.pl
  • lines changed 359, context: html, text, full: html, text
    working up script for NCBI RefSeq gene track processing refs #13673
    
• src/hg/utils/gff3ToPsl/gff3ToPsl.c
  • lines changed 1, context: html, text, full: html, text
    Gap= lines are on the cDNA_match lines not just match lines refs #13673
    
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 3, context: html, text, full: html, text
    v328 final build refs #16669
    
• src/utils/userApps/fetchChromSizes
  • lines changed 50, context: html, text, full: html, text
    fixup broken zcat for Mac, fix broken FTP options refs #14987 #16763