File Changes for markd

v328_preview2 to v328_base (2016-01-25 to 2016-02-08) v328

• src/hg/utils/gff3ToGenePred/gff3ToGenePred.c
  • lines changed 38, context: html, text, full: html, text
    added option to create genePreds records from GFF3 when exons are contained in genes, as NCBI does for psuedogenes
    
  • lines changed 97, context: html, text, full: html, text
    added options to process minimally structured genes and to output root records that are not processed
    
• src/hg/utils/gff3ToGenePred/tests/expected/genesWithExonsTest.gp
  • lines changed 1, context: html, text, full: html, text
    added option to create genePreds records from GFF3 when exons are contained in genes, as NCBI does for psuedogenes
    
  • lines changed 1, context: html, text, full: html, text
    added options to process minimally structured genes and to output root records that are not processed
    
• src/hg/utils/gff3ToGenePred/tests/expected/minimalGenesTest.gp
  • lines changed 1, context: html, text, full: html, text
    added options to process minimally structured genes and to output root records that are not processed
    
  • lines changed 8, context: html, text, full: html, text
    added options to process minimally structured genes and to output root records that are not processed
    
• src/hg/utils/gff3ToGenePred/tests/expected/minimalGenesTest.unprocessed
  • lines changed 2, context: html, text, full: html, text
    added options to process minimally structured genes and to output root records that are not processed
    
  • lines changed 5, context: html, text, full: html, text
    added options to process minimally structured genes and to output root records that are not processed
    
• src/hg/utils/gff3ToGenePred/tests/input/ncbiRefSeq.pseudoGenes.gff3
  • lines changed 15, context: html, text, full: html, text
    added option to create genePreds records from GFF3 when exons are contained in genes, as NCBI does for psuedogenes
    
  • lines changed 12, context: html, text, full: html, text
    added options to process minimally structured genes and to output root records that are not processed
    
• src/hg/utils/gff3ToGenePred/tests/makefile
  • lines changed 7, context: html, text, full: html, text
    added option to create genePreds records from GFF3 when exons are contained in genes, as NCBI does for psuedogenes
    
  • lines changed 5, context: html, text, full: html, text
    added options to process minimally structured genes and to output root records that are not processed
    
• src/inc/gff3.h
  • lines changed 4, context: html, text, full: html, text
    added options to process minimally structured genes and to output root records that are not processed
    
• src/lib/gff3.c
  • lines changed 4, context: html, text, full: html, text
    added options to process minimally structured genes and to output root records that are not processed