Commits for markd

v328_preview2 to v328_base (2016-01-25 to 2016-02-08) v328

• added option to create genePreds records from GFF3 when exons are contained in genes, as NCBI does for psuedogenes
  
  • src/hg/utils/gff3ToGenePred/gff3ToGenePred.c - lines changed 38, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/expected/genesWithExonsTest.gp - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/input/ncbiRefSeq.pseudoGenes.gff3 - lines changed 15, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/makefile - lines changed 7, context: html, text, full: html, text
• added options to process minimally structured genes and to output root records that are not processed
  
  • src/hg/utils/gff3ToGenePred/tests/expected/genesWithExonsTest.gp - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/expected/minimalGenesTest.gp - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/expected/minimalGenesTest.unprocessed - lines changed 2, context: html, text, full: html, text
• added options to process minimally structured genes and to output root records that are not processed
  
  • src/hg/utils/gff3ToGenePred/gff3ToGenePred.c - lines changed 97, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/expected/minimalGenesTest.gp - lines changed 8, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/expected/minimalGenesTest.unprocessed - lines changed 5, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/input/ncbiRefSeq.pseudoGenes.gff3 - lines changed 12, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/makefile - lines changed 5, context: html, text, full: html, text
  • src/inc/gff3.h - lines changed 4, context: html, text, full: html, text
  • src/lib/gff3.c - lines changed 4, context: html, text, full: html, text