Commits for angie

v327_base to v328_preview (2016-01-11 to 2016-01-18) v328

• Adding description of dbNSFP v3.1a for hg38, including new scores from VEST.
  refs #16503
  
  • src/hg/htdocs/goldenPath/help/hgVaiHelpText.html - lines changed 17, context: html, text, full: html, text
• Adding minimal explanation of transcript status options.
  refs #16502
  
  • src/hg/htdocs/goldenPath/help/hgVaiHelpText.html - lines changed 25, context: html, text, full: html, text
• Added the capability to substitute $hgsid from the cart in a help file
  included by webIncludeHelpFileSubst, for internal links.
  Improved the description of hgVai Transcript Status options.
  refs #16502
  
  • src/hg/hgVai/hgVai.c - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgVaiHelpText.html - lines changed 15, context: html, text, full: html, text
  • src/hg/inc/hVarSubst.h - lines changed 8, context: html, text, full: html, text
  • src/hg/inc/web.h - lines changed 5, context: html, text, full: html, text
  • src/hg/lib/hVarSubst.c - lines changed 35, context: html, text, full: html, text
  • src/hg/lib/web.c - lines changed 30, context: html, text, full: html, text