Commits for hiram

v327_base to v328_preview (2016-01-11 to 2016-01-18) v328

• out of test mode send mail to all refs #16513
  
  • src/utils/qa/weeklybld/sendLogEmail.pl - lines changed 2, context: html, text, full: html, text
• eliminate duplicates in the list of victims refs #16513
  
  • src/utils/qa/weeklybld/sendLogEmail.pl - lines changed 2, context: html, text, full: html, text
• similar to bedCollapse.pl but even more condensing of any overlapping items no redmine
  
  • src/utils/bedSingleCover.pl - lines changed 55, context: html, text, full: html, text
• fixup usage message to clearly explain what this does and allow stdin as an input argument no redmine
  
  • src/utils/bedCollapse.pl - lines changed 12, context: html, text, full: html, text
• add usage note of how to use awk to run up a featureBits measurement no redmine
  
  • src/utils/bedSingleCover.pl - lines changed 4, context: html, text, full: html, text
• adding bedSingleCover.pl to the utils list no redmine
  
  • src/utils/makefile - lines changed 1, context: html, text, full: html, text
• corrected altSeqLiftOverPsl table contents refs #11681
  
  • src/hg/makeDb/doc/hg38/hg38.txt - lines changed 45, context: html, text, full: html, text
• v328 preview1 refs #16513
  
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text