Commits for hiram

v328_preview to v328_preview2 (2016-01-18 to 2016-01-25) v328

• document NCBI RefSeq gene track construction refs #13673
  
  • src/hg/makeDb/doc/hg38/gbffToCds.pl - lines changed 86, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/gffToIx.pl - lines changed 243, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/ncbiRefSeq.txt - lines changed 135, context: html, text, full: html, text
• corrected typo errors refs #13673
  
  • src/hg/makeDb/doc/hg38/ncbiRefSeq.txt - lines changed 2, context: html, text, full: html, text
• adding MicMur2 to the chain list refs #15292
  
  • src/hg/makeDb/schema/all.joiner - lines changed 1, context: html, text, full: html, text
• testing NCBI RefSeq track refs #13673
  
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 104, context: html, text, full: html, text
• turn on more genbank for ce11 refs #15209
  
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 4, context: html, text, full: html, text
• up to date with current scripts refs #16660
  
  • src/hg/utils/automation/grcRunIncidentUpdate.sh - lines changed 50, context: html, text, full: html, text
  • src/hg/utils/automation/grcUpdate.sh - lines changed 5, context: html, text, full: html, text
• current parsing of *_issues.gff incident database refs #16660
  
  • src/hg/utils/automation/grcParseGff.pl - lines changed 44, context: html, text, full: html, text
• special URL links for ce11 Ensembl transcripts refs #15209
  
  • src/hg/hgc/hgc.c - lines changed 1, context: html, text, full: html, text
• same special handling for ce11 as was for ce6 refs #15209
  
  • src/hg/hgc/hgc.c - lines changed 3, context: html, text, full: html, text
• rerun genbank and add blatServer refs #15209
  
  • src/hg/makeDb/doc/ce11/initialBuild.txt - lines changed 24, context: html, text, full: html, text
• v328 preview2 refs #16669
  
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text