All File Changes

v329_base to v330_preview (2016-02-29 to 2016-03-07) v330

• confs/hgwbeta.hg.conf
  • lines changed 13, context: html, text, full: html, text
    Installing updated hg.conf files from UCSC servers
    
• confs/hgwdev.hg.conf
  • lines changed 18, context: html, text, full: html, text
    Installing updated hg.conf files from UCSC servers
    
• confs/preview.hg.conf
  • lines changed 1, context: html, text, full: html, text
    Installing updated hg.conf files from UCSC servers
    
  • lines changed 238, context: html, text, full: html, text
    Installing updated hg.conf files from UCSC servers
    
• confs/rr.hg.conf
  • lines changed 7, context: html, text, full: html, text
    Installing updated hg.conf files from UCSC servers
    
• src/hg/bedItemOverlapCount/bedItemOverlapCount.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/bioImage/bioImageLoad/bioImageLoad.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/bioImage/knownToBioImage/knownToBioImage.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/checkTableCoords/checkTableCoords.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/cirm/cdw/cdwSubmit/cdwSubmit.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/cirm/cdw/wrangle/kallistoToMatrix/kallistoToMatrix
  • lines changed 41, context: html, text, full: html, text
    making the kallisto parser ready for gtex's huge files
    
• src/hg/das/das.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/encode/hgEncodeScheduler/hgEncodeScheduler.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/encode3/encodeDataWarehouse/edwSubmit/edwSubmit.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/encode3/importEncode2/encode2Meta/encode2Meta.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/estOrient/estOrient.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/expMatrixToJson/expMatrixToJson.c
  • lines changed 23, context: html, text, full: html, text
    Cleaning up the code, removing commented out code lines as reccommended by Braney, refs #16216
    
• src/hg/featureBits/featureBits.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/geneBounds/clusterRna/clusterRna.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/geneBounds/eisenInput/eisenInput.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/geneBounds/estLibStats/estLibStats.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/getRnaPred/getRnaPred.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/gsid/gsidMember/gsidMember.c
  • lines changed 3, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/hgApi/hgApi.c
  • lines changed 1, context: html, text, full: html, text
    set up udcCacheDir in hgApi to fix metadata links in hgTrackUi
    
• src/hg/hgGenome/hgGenome.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/hgGenome/import.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/hgPcr/hgPcr.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/hgTables/hgTables.c
  • lines changed 7, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/hgTables/seqOut.c
  • lines changed 1, context: html, text, full: html, text
    fix bug in outputting sequence in the table browser for refSeq table
    
• src/hg/hgTablesTest/hgTablesTest.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/hgText/hgText.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/hgTracks/cgapSageTrack.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/hgTracks/cutterTrack.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/hgTracks/hgTracks.c
  • lines changed 15, context: html, text, full: html, text
    Adding description requested by Angie.
    
  • lines changed 3, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/hgTracks/pubsTracks.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/hgTracks/simpleTracks.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/hgc/hgc.c
  • lines changed 89, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
  • lines changed 8, context: html, text, full: html, text
    do not separate extra fields that are not even printed in hgc, refs #14486
    
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/hgc/pubs.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/hgcentralTidy/hgcentralTidy.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/htdocs/FAQ/FAQblat.html
  • lines changed 5, context: html, text, full: html, text
    adding one more link to the blat faq, no redmine
    
• src/hg/htdocs/goldenPath/help/bigGenePred.html
  • lines changed 1, context: html, text, full: html, text
    Fixing an example line about making bigGenePred
    
• src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html
  • lines changed 18, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
• src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v1.html
  • lines changed 18, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 46, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
• src/hg/htdocs/images/encode95CellsDendrogram.png
  • lines changed 0, context: html, text, full: html, text
    Adding the dendrogram image that was put into the hg38 ENCODE tracks, refs #16844
    
• src/hg/htdocs/style/HGStyle.css
  • lines changed 20, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
• src/hg/lib/cartTrackDb.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/lib/chromGraph.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/lib/chromGraphFactory.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/lib/chromInfo.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/lib/customTrack.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/lib/encode/encodeExp.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/lib/fishClones.as
  • lines changed 1, context: html, text, full: html, text
    Changing the table schema descriptions, refs #15522
    
• src/hg/lib/genoLay.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/lib/haplotypes.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/lib/hdb.c
  • lines changed 9, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/lib/hgFind.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/lib/hgRelate.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/lib/jksql.c
  • lines changed 9, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/lib/liftOver.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/lib/snp125Exceptions.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/lib/snpFasta.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/lib/web.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/doc/eboVir3/patSeq.txt
  • lines changed 20, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
• src/hg/makeDb/doc/felCat4.txt
  • lines changed 16, context: html, text, full: html, text
    liftOvers per user request refs #16879
    
• src/hg/makeDb/doc/galVar1/initialBuild.txt
  • lines changed 541, context: html, text, full: html, text
    beginning build of galVar1 browser no redmine
    
• src/hg/makeDb/doc/gtex/V6.txt
  • lines changed 8, context: html, text, full: html, text
    Repairing problem with V6 sample table. Broad changed field order in input file, so changes were needed to parser. refs #15645
    
• src/hg/makeDb/doc/hg19.txt
  • lines changed 7, context: html, text, full: html, text
    Corrected tgpPhase3 filenames for chrX and chrY -- thanks Matt for finding!
    refs #16910
    
  • lines changed 79, context: html, text, full: html, text
    Built snp146* tracks for hg19.
    refs #16777
    
  • lines changed 39, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
• src/hg/makeDb/doc/hg38/hg38.txt
  • lines changed 2, context: html, text, full: html, text
    add scores to the tracks in mm10 refs #10083
    
• src/hg/makeDb/doc/mm10.txt
  • lines changed 21, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
  • lines changed 48, context: html, text, full: html, text
    add scores to the tracks in mm10 refs #10083
    
  • lines changed 6, context: html, text, full: html, text
    a check for validity in mm10 SNP
    
• src/hg/makeDb/doc/mm5.txt
  • lines changed 18, context: html, text, full: html, text
    liftOvers per user request refs #16879
    
• src/hg/makeDb/doc/rn4.txt
  • lines changed 16, context: html, text, full: html, text
    liftOvers per user request refs #16879
    
• src/hg/makeDb/genbank/etc/align.dbs
  • lines changed 193, context: html, text, full: html, text
    restore align.dbs to include all the current assemblies
    
• src/hg/makeDb/genbank/src/ccds/ccdsCommon.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/genbank/src/ccds/ccdsImport.c
  • lines changed 6, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/genbank/src/dbload/gbMetaData.c
  • lines changed 6, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/genbank/src/gbSanity/chkAlignTbls.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/genbank/src/gbSanity/chkMetaDataTbls.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/genbank/src/gbSanity/gbSanity.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/genbank/src/lib/extFileTbl.c
  • lines changed 3, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/genbank/src/lib/gbLoadedTbl.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/genbank/src/lib/gbStatusTbl.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/genbank/src/lib/imageCloneTbl.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/genbank/src/lib/seqTbl.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/genbank/src/lib/sqlDeleter.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/genbank/src/repair/refPepRepair.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/hgClonePos/hgClonePos.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/hgCtgPos/hgCtgPos.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/hgDeleteChrom/hgDeleteChrom.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/hgGcPercent/hgGcPercent.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/hgGeneBands/hgGeneBands.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/hgKgGetText/hgKgGetText.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/hgKgMrna/hgKgMrna.c
  • lines changed 8, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/hgKnownMore.oo21/hgKnownMore.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/hgKnownMore/hgKnownMore.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/hgLoadChromGraph/hgLoadChromGraph.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/hgLoadWiggle/hgLoadWiggle.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/hgStsAlias/hgStsAlias.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/hgTomRough/hgTomRough.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/hgTpf/hgTpf.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/outside/hgFiberglass/hgFiberglass.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/outside/hgFlyBase/hgFlyBase.c
  • lines changed 9, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/outside/hgGtex/hgGtex.c
  • lines changed 14, context: html, text, full: html, text
    Repairing problem with V6 sample table. Broad changed field order in input file, so changes were needed to parser. refs #15645
    
• src/hg/makeDb/outside/hgLsSnpPdbLoad/hgLsSnpPdbLoad.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/outside/hgSoftPromoter/hgSoftPromoter.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/outside/hgSoftberryHom/hgSoftberryHom.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/outside/yeast/hgSgdGfp/hgSgdGfp.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/schema/all.joiner
  • lines changed 16, context: html, text, full: html, text
    all.joiner entries for hg38p5 and p6, refs #16648
    
  • lines changed 6, context: html, text, full: html, text
    update ws245Genes for ce11 refs #15209
    
  • lines changed 1, context: html, text, full: html, text
    Adding tablesIgnored entry for one last hg38 patch 6 track, refs #16648
    
• src/hg/makeDb/schema/dbFindFieldsWith/dbFindFieldsWith.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/schema/dbSnoop/dbSnoop.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/schema/makeTableDescriptions/makeTableDescriptions.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/makeDb/trackDb/drosophila/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    refGene overrides missing override refs #16821
    
• src/hg/makeDb/trackDb/fishClones.html
  • lines changed 1, context: html, text, full: html, text
    Fixing link to BAC site that hgTables robot didn't like. no redmine
    
• src/hg/makeDb/trackDb/galVar/galVar1/description.html
  • lines changed 63, context: html, text, full: html, text
    turning on Galeopterus variegatus/Malayan flying lemur completely no redmine
    
• src/hg/makeDb/trackDb/galVar/galVar1/gap.html
  • lines changed 30, context: html, text, full: html, text
    turning on Galeopterus variegatus/Malayan flying lemur completely no redmine
    
• src/hg/makeDb/trackDb/galVar/galVar1/gold.html
  • lines changed 34, context: html, text, full: html, text
    turning on Galeopterus variegatus/Malayan flying lemur completely no redmine
    
• src/hg/makeDb/trackDb/galVar/galVar1/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    turning on Galeopterus variegatus/Malayan flying lemur completely no redmine
    
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    add alpha tag to cramTest track in hg19
    
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    Changing release tags for patch6 track set on hg38, refs #16648
    
  • lines changed 2, context: html, text, full: html, text
    Removing Patch3 include and removing release tags for Patch6 include ahead of Patch6 release, refs #16648
    
• src/hg/makeDb/trackDb/human/hg38/wgEncodeReg.html
  • lines changed 19, context: html, text, full: html, text
    Changing track descriptions to account for changing colors in hg38 refs #16844
    
• src/hg/makeDb/trackDb/human/hg38/wgEncodeRegDnase.html
  • lines changed 10, context: html, text, full: html, text
    Updating the references and adding the dendrogram image, refs #16844
    
  • lines changed 14, context: html, text, full: html, text
    Changing track descriptions to account for changing colors in hg38 refs #16844
    
• src/hg/makeDb/trackDb/human/hg38/wgEncodeRegDnaseClustered.html
  • lines changed 8, context: html, text, full: html, text
    Changing track descriptions to account for changing colors in hg38 refs #16844
    
• src/hg/makeDb/trackDb/human/hg38/wgEncodeRegDnaseSignal.html
  • lines changed 13, context: html, text, full: html, text
    Updating the references and adding the dendrogram image, refs #16844
    
  • lines changed 14, context: html, text, full: html, text
    Changing track descriptions to account for changing colors in hg38 refs #16844
    
• src/hg/makeDb/trackDb/human/hg38/wgEncodeRegMarkH3k27ac.html
  • lines changed 10, context: html, text, full: html, text
    Changing track descriptions to account for changing colors in hg38 refs #16844
    
• src/hg/makeDb/trackDb/human/hg38/wgEncodeRegMarkH3k4me1.html
  • lines changed 10, context: html, text, full: html, text
    Changing track descriptions to account for changing colors in hg38 refs #16844
    
• src/hg/makeDb/trackDb/human/hg38/wgEncodeRegMarkH3k4me3.html
  • lines changed 10, context: html, text, full: html, text
    Changing track descriptions to account for changing colors in hg38 refs #16844
    
• src/hg/makeDb/trackDb/human/hg38/wgEncodeRegTxn.html
  • lines changed 10, context: html, text, full: html, text
    Changing track descriptions to account for changing colors in hg38 refs #16844
    
• src/hg/makeDb/trackDb/lizard/anoCar2/trackDb.ra
  • lines changed 14, context: html, text, full: html, text
    an alignment for a collaboration with WashU
    
• src/hg/makeDb/trackDb/makefile
  • lines changed 1, context: html, text, full: html, text
    turning on Galeopterus variegatus/Malayan flying lemur completely no redmine
    
• src/hg/makeDb/trackDb/mouse/cloneEnd.trackDb.ra
  • lines changed 24, context: html, text, full: html, text
    update clone ends composite organization and documentation refs #10083
    
• src/hg/makeDb/trackDb/mouse/cloneEndSuper.html
  • lines changed 72, context: html, text, full: html, text
    update clone ends composite organization and documentation refs #10083
    
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
  • lines changed 13, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
• src/hg/makeDb/trackDb/patSeq.html
  • lines changed 129, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
• src/hg/makeDb/trackDb/squirt/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    refGene overrides missing override refs #16821
    
• src/hg/makeDb/trackDb/tagTypes.tab
  • lines changed 4, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
• src/hg/makeDb/trackDb/trackDb.ra
  • lines changed 34, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
  • lines changed 2, context: html, text, full: html, text
    fixing recursive error on tdbCheck with patSeq, no redmine
    
• src/hg/mouseStuff/bedCoverage/bedCoverage.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/mouseStuff/knownVsBlat/knownVsBlat.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/mouseStuff/libScan/libScan.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/mouseStuff/mafCoverage/mafCoverage.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/mouseStuff/mousePoster/mousePoster.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/mouseStuff/netClass/netClass.c
  • lines changed 5, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/mouseStuff/regionPicker/regionPicker.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/mouseStuff/rikenBestInCluster/rikenBestInCluster.c
  • lines changed 3, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/near/hgKnownToSuper/hgKnownToSuper.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/near/knownToHprd/knownToHprd.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/oneShot/cacheMergedRanges/cacheMergedRanges.c
  • lines changed 3, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/oneShot/cartSim/cartSim.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/oneShot/cartSimNoInsert/cartSimNoInsert.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/oneShot/fakeHomozygousity/fakeHomozygousity.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/oneShot/getHumanBrainRna/getHumanBrainRna.c
  • lines changed 4, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/oneShot/randomEst/randomEst.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/oneShot/rcvs/rcvs.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/perf/hgTracksRandom.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/poster/finPoster/finPoster.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/poster/foldDb/foldDb.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/protein/gadPos/gadPos.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/protein/kgAttachKegg/kgAttachKegg.c
  • lines changed 3, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/protein/pbCalDistGlobal/pbCalDistGlobal.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/protein/pbCalPi/pbCalPi.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/protein/pfamXref/pfamXref.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/pslCheck/pslCheck.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/qa/timePosTable.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/recycleDb/bedUp/bedUp.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/snp/details/dbSnp.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/snp/snpLoad/snpContigLocFilter.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/snp/snpLoad/snpContigLocFilter125.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/snp/snpLoad/snpContigLocusIdCondense.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/snp/snpLoad/snpContigLocusIdFilter.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/snp/snpLoad/snpContigLocusIdFilter125.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/snp/snpLoad/snpLoad.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/snp/snpLoad/snpLoadFromTmp.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/snp/snpLoad/snpSplit.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/snp/snpLoad/subSnpCondense.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/snpException/snpException.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/synMap/createSlamParaSpec.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/test/otest/test1.c
  • lines changed 10, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/tutorial/affyVsIlluminaCommon/affyVsIlluminaCommon.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/txCds/txCdsGoodBed/txCdsGoodBed.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/txGraph/txAbFragFind/txAbFragFind.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/utils/automation/EnsGeneAutomate.pm
  • lines changed 221, context: html, text, full: html, text
    adding v83 definitions refs #16951
    
• src/hg/utils/bedExtendRanges/bedExtendRanges.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/utils/gff3ToGenePred/gff3ToGenePred.c
  • lines changed 8, context: html, text, full: html, text
    added -defaultCdsStatusToUnknown to gff3ToGenePred
    
• src/hg/utils/gff3ToGenePred/tests/makefile
  • lines changed 5, context: html, text, full: html, text
    added -defaultCdsStatusToUnknown to gff3ToGenePred
    
• src/hg/utils/makeTableList/makeTableList.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/utils/mysqlSecurityCheck/mysqlSecurityCheck.c
  • lines changed 7, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/utils/otto/omim/buildOmimTracks.sh
  • lines changed 27, context: html, text, full: html, text
    Updated version of OMIM pipeline scripts, refs #16796
    
• src/hg/utils/otto/omim/doOmimLocation/doOmimLocation.c
  • lines changed 21, context: html, text, full: html, text
    Updated version of OMIM pipeline scripts, refs #16796
    
• src/hg/utils/otto/omim/makefile
  • lines changed 1, context: html, text, full: html, text
    Updated version of OMIM pipeline scripts, refs #16796
    
• src/hg/utils/otto/omim/omim.tables
  • lines changed 1, context: html, text, full: html, text
    Updated version of OMIM pipeline scripts, refs #16796
    
• src/hg/utils/otto/omim/omimWrapper.sh
  • lines changed 1, context: html, text, full: html, text
    Updated version of OMIM pipeline scripts, refs #16796
    
• src/hg/utils/safePush/safePush.c
  • lines changed 3, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/visiGene/hgVisiGene/fullTextExperiment.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/visiGene/hgVisiGene/visiSearch.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/visiGene/knownToVisiGene/knownToVisiGene.c
  • lines changed 3, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/visiGene/vgGetText/vgGetText.c
  • lines changed 7, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/visiGene/vgLoadJax/vgLoadJax.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/visiGene/vgLoadMahoney/vgLoadMahoney.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/visiGene/vgProbeTrack/vgProbeTrack.c
  • lines changed 8, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/visiGene/vgRemoveSubmission/vgRemoveSubmission.c
  • lines changed 2, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/hg/visiGene/visiGeneSearch/visiGeneSearch.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/lib/common.c
  • lines changed 2, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
• src/lib/https.c
  • lines changed 35, context: html, text, full: html, text
    Fixes #16872. bigBedToBed on HTTPS URL was terminating with exitcode 141 and being killed by default SIGPIPE behavior. This now has a fairly elegant solution that should work on most OSes.
    
  • lines changed 3, context: html, text, full: html, text
    Oops, preserving errno better in messages
    
• src/oneShot/newSang6/newSang6.c
  • lines changed 1, context: html, text, full: html, text
    Replacing simple literal NOSQLINJ in string with the #define NOSQLINJ. This is slightly better because the compiler can catch a mis-spelling of the NOSQLINJ keyword. This was suggested by Angie.
    
• src/utils/makefile
  • lines changed 3, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
• src/utils/patSeqFilterBulkAndAnnotate
  • lines changed 213, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
• src/utils/patSeqSummarizeDocs
  • lines changed 202, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
• src/utils/qa/weeklybld/downloadBuildSettings.mk
  • lines changed 1, context: html, text, full: html, text
    no change in dep libs with USE SSL on so turn it on this will not change dep libs refs #16872
    
• src/utils/qa/weeklybld/sendLogEmail.pl
  • lines changed 3, context: html, text, full: html, text
    add ann to victim list email refs #16821
    

• lines changed: 3186
• files changed: 224