File Changes for max

v329_base to v330_preview (2016-02-29 to 2016-03-07) v330

• src/hg/cirm/cdw/wrangle/kallistoToMatrix/kallistoToMatrix
  • lines changed 41, context: html, text, full: html, text
    making the kallisto parser ready for gtex's huge files
    
• src/hg/hgc/hgc.c
  • lines changed 89, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
  • lines changed 8, context: html, text, full: html, text
    do not separate extra fields that are not even printed in hgc, refs #14486
    
• src/hg/htdocs/FAQ/FAQblat.html
  • lines changed 5, context: html, text, full: html, text
    adding one more link to the blat faq, no redmine
    
• src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html
  • lines changed 18, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
• src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v1.html
  • lines changed 18, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 46, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
• src/hg/htdocs/style/HGStyle.css
  • lines changed 20, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
• src/hg/makeDb/doc/eboVir3/patSeq.txt
  • lines changed 20, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
• src/hg/makeDb/doc/hg19.txt
  • lines changed 39, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
• src/hg/makeDb/doc/mm10.txt
  • lines changed 21, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
  • lines changed 13, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
• src/hg/makeDb/trackDb/patSeq.html
  • lines changed 129, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
• src/hg/makeDb/trackDb/tagTypes.tab
  • lines changed 4, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
• src/hg/makeDb/trackDb/trackDb.ra
  • lines changed 34, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
  • lines changed 2, context: html, text, full: html, text
    fixing recursive error on tdbCheck with patSeq, no redmine
    
• src/lib/common.c
  • lines changed 2, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
• src/utils/makefile
  • lines changed 3, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
• src/utils/patSeqFilterBulkAndAnnotate
  • lines changed 213, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files
    
• src/utils/patSeqSummarizeDocs
  • lines changed 202, context: html, text, full: html, text
    for patents track, refs #14486:
    - two additional trackDb statements to remove or separate extra fields
    of bigBed files in track hubs
    - changes to hgc to format extra fields as a table, looks somewhat
    nicer
    - two scripts to reformat patent tables to bigBed files