Commits for max

v329_base to v330_preview (2016-02-29 to 2016-03-07) v330

• for patents track, refs #14486:
  - two additional trackDb statements to remove or separate extra fields
  of bigBed files in track hubs
  - changes to hgc to format extra fields as a table, looks somewhat
  nicer
  - two scripts to reformat patent tables to bigBed files
  
  • src/hg/hgc/hgc.c - lines changed 89, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html - lines changed 18, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v1.html - lines changed 18, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml - lines changed 46, context: html, text, full: html, text
  • src/hg/htdocs/style/HGStyle.css - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/doc/eboVir3/patSeq.txt - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg19.txt - lines changed 39, context: html, text, full: html, text
  • src/hg/makeDb/doc/mm10.txt - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/patSeq.html - lines changed 129, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 34, context: html, text, full: html, text
  • src/lib/common.c - lines changed 2, context: html, text, full: html, text
  • src/utils/makefile - lines changed 3, context: html, text, full: html, text
  • src/utils/patSeqFilterBulkAndAnnotate - lines changed 213, context: html, text, full: html, text
  • src/utils/patSeqSummarizeDocs - lines changed 202, context: html, text, full: html, text
• do not separate extra fields that are not even printed in hgc, refs #14486
  
  • src/hg/hgc/hgc.c - lines changed 8, context: html, text, full: html, text
• fixing recursive error on tdbCheck with patSeq, no redmine
  
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 2, context: html, text, full: html, text
• adding one more link to the blat faq, no redmine
  
  • src/hg/htdocs/FAQ/FAQblat.html - lines changed 5, context: html, text, full: html, text
• making the kallisto parser ready for gtex's huge files
  
  • src/hg/cirm/cdw/wrangle/kallistoToMatrix/kallistoToMatrix - lines changed 41, context: html, text, full: html, text