Commits for braney

v332_preview2 to v332_base (2016-04-25 to 2016-05-02) v332

34875095e36dc30f563d0c3780d4334a2e025be0 Mon Apr 25 14:11:16 2016 -0700

• add additional space before density options in dialog
  
  • src/hg/lib/hui.c - lines changed 1, context: html, text, full: html, text

84f058c937c77736a0f8c72b1dd5e32ef72731fe Mon Apr 25 15:25:54 2016 -0700

• fix a problem with coverage mode in dense
  
  • src/hg/hgTracks/simpleTracks.c - lines changed 1, context: html, text, full: html, text

beb98ce45ec6b8f58d0e5ef448434c57751e8c0c Tue Apr 26 11:04:24 2016 -0700

• fix various problems with BAM coverage mode
  
  • src/hg/hgTracks/hgTracks.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 7, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 1, context: html, text, full: html, text

4d748c0d4a31ef6982e0f42f4a26c11f1eb93250 Wed Apr 27 10:31:18 2016 -0700

• fix problem with checkbox in coverage wiggle dialog
  
  • src/hg/lib/hui.c - lines changed 2, context: html, text, full: html, text

bb9b1c667a650ececc94f29e1c9a418538f91782 Wed Apr 27 19:18:33 2016 -0700

• all.joiner and trackDb changes for knownGene v24
  
  • src/hg/makeDb/schema/all.joiner - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.ra - lines changed 39, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGene.ra - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 20, context: html, text, full: html, text

6a7bab37f60c67b24fead07c70c27b462a0d9f90 Thu Apr 28 13:21:39 2016 -0700

• some final touchs to hg38 Gencode knownGene before entering into pushq
  
  • src/hg/makeDb/doc/ucscGenes/hg38.ucscGenes17.sh - lines changed 104, context: html, text, full: html, text

f0ffa5ddb60e25932b50b2638100d9fef8e36502 Thu Apr 28 15:07:52 2016 -0700

• highlight the Gencode id on the hgGene page for Gencode.
  
  • src/hg/hgGene/hgGene.c - lines changed 3, context: html, text, full: html, text

f100609c5d2e4a9b54074f4e374972ceb7cefc07 Fri Apr 29 09:30:10 2016 -0700

• add knownAttrs table to capture what's in the wgEncodeGencodeAttrs table
  
  • src/hg/lib/knownAttrs.as - lines changed 16, context: html, text, full: html, text
  • src/hg/lib/knownAttrs.sql - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/doc/ucscGenes/hg38.ucscGenes17.sh - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/schema/all.joiner - lines changed 1, context: html, text, full: html, text

e35f8411576669175e9b0529c0aec04615c0422a Mon May 2 10:28:58 2016 -0700

• changes for Gencode v24 knownGene.
  
  • src/hg/lib/txGraph.c - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/makeGencodeKnownGene/makeGencodeKnownGene.c - lines changed 11, context: html, text, full: html, text
  • src/hg/txGraph/txgAnalyze/txgAnalyze.c - lines changed 1, context: html, text, full: html, text