Commits for max

v336_preview2 to v336_base (2016-07-18 to 2016-07-25) v336

2845759e8b8bf4950755ca1a1270ecd60abaa19b Tue Jul 19 12:34:57 2016 -0700

• adding an AWK script that Mark wrote. I am using this script for the
  uniprot track and am comitting it now so that the uniprot pipeline can
  be run
  
  • src/utils/makefile - lines changed 2, context: html, text, full: html, text
  • src/utils/pslProtCnv - lines changed 65, context: html, text, full: html, text

745524a7cc8f2fb4bceea120fd25201ddeff6acc Tue Jul 19 13:39:08 2016 -0700

• fixing an issue where uniprotToTab would not work with trembl. Email
  from Eric Ho, refs #17717
  
  • src/utils/uniprotToTab - lines changed 12, context: html, text, full: html, text

273486dcbd4a0fd80d7f09be639f32cd58598881 Wed Jul 20 15:03:46 2016 -0700

• adding uniprot track for hg38
  
  • src/hg/makeDb/doc/hg38/uniprot.txt - lines changed 28, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/spUniprot.html - lines changed 22, context: html, text, full: html, text
  • src/utils/makefile - lines changed 2, context: html, text, full: html, text
  • src/utils/pslSameGene - lines changed 54, context: html, text, full: html, text
  • src/utils/uniprotLift - lines changed 4, context: html, text, full: html, text

fa44dd7153c4904ab3e7d3fb6c4d4aeb0943fdc1 Thu Jul 21 10:19:57 2016 -0700

• small fixed to the cram fetching script, refs #17547
  
  • src/product/scripts/fetchCramReference.sh - lines changed 3, context: html, text, full: html, text

b0b0150d8733c01c3bc94ca21abd1e152fa5ca57 Thu Jul 21 12:25:22 2016 -0700

• adding cram support to gbib, refs #17547
  
  • src/browserbox/makefile - lines changed 4, context: html, text, full: html, text
  • src/browserbox/root/fetchCramReference.sh - lines changed 112, context: html, text, full: html, text
  • src/browserbox/root/updateBrowser.sh - lines changed 15, context: html, text, full: html, text
  • src/browserbox/usr/local/apache/cgi-bin/hg.conf - lines changed 11, context: html, text, full: html, text

b9ad4adc4a2872033c7aaad1dfed5e1be0c71875 Thu Jul 21 12:26:09 2016 -0700

• adding data section to clinvar (no redmine) and pointer to uniprot hub
  to uniprot track refs #17717
  
  • src/hg/makeDb/trackDb/human/clinvar.html - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/spUniprot.html - lines changed 6, context: html, text, full: html, text

3d1a59e76bdcd9ef01738c5c65fd631918f31f96 Mon Jul 25 10:34:46 2016 -0700

• typo in README
  
  • src/product/installer/README.md - lines changed 1, context: html, text, full: html, text