File Changes for mspeir

v336_preview to v336_preview2 (2016-07-11 to 2016-07-18) v336

• src/hg/htdocs/goldenPath/help/mysql.html
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    2f39e2335315cd28bf865c953a6b786f97539585 Fri Jul 15 14:29:40 2016 -0700
    Updating example hg.conf. User noted it wasnt enough to use some utils. refs #17652
    
• src/hg/makeDb/doc/hg38/hg38.txt
  • lines changed 1, context: html, text, full: html, text
    f70417672c7568a9dc43fcd7a18d72f140fc3386 Wed Jul 13 10:07:13 2016 -0700
    Reomving line from makedoc about not releasing to the RR since we are releasing the track, refs #17626
    
• src/hg/makeDb/schema/all.joiner
  • lines changed 2, context: html, text, full: html, text
    a08ae07aa4dac2ed4abdeeea29622a8b3553de23 Wed Jul 13 10:01:51 2016 -0700
    Adjusting minCheck levels for two gencode tracks, refs #17626
    
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV20.html
  • lines changed 0, context: html, text, full: html, text
    d60f6f78bfcd61b7dfcd8852d8a040649239b471 Thu Jul 14 11:43:29 2016 -0700
    Minor link and whitespace changes to APPRIS section. Change version number link for v24 page. Other White space changes. mostly refs #17626
    
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV21.html
  • lines changed 0, context: html, text, full: html, text
    d60f6f78bfcd61b7dfcd8852d8a040649239b471 Thu Jul 14 11:43:29 2016 -0700
    Minor link and whitespace changes to APPRIS section. Change version number link for v24 page. Other White space changes. mostly refs #17626
    
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV22.html
  • lines changed 5, context: html, text, full: html, text
    d60f6f78bfcd61b7dfcd8852d8a040649239b471 Thu Jul 14 11:43:29 2016 -0700
    Minor link and whitespace changes to APPRIS section. Change version number link for v24 page. Other White space changes. mostly refs #17626
    
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV23.html
  • lines changed 5, context: html, text, full: html, text
    d60f6f78bfcd61b7dfcd8852d8a040649239b471 Thu Jul 14 11:43:29 2016 -0700
    Minor link and whitespace changes to APPRIS section. Change version number link for v24 page. Other White space changes. mostly refs #17626
    
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV23.ra
  • lines changed 1, context: html, text, full: html, text
    657177218ce0458c211e9a800bf98e7abe9763de Thu Jul 14 14:37:39 2016 -0700
    Hiding old GENCODE track, refs #17626
    
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV24.html
  • lines changed 6, context: html, text, full: html, text
    d60f6f78bfcd61b7dfcd8852d8a040649239b471 Thu Jul 14 11:43:29 2016 -0700
    Minor link and whitespace changes to APPRIS section. Change version number link for v24 page. Other White space changes. mostly refs #17626
    
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    670857293f0380213d401db9bb36b85350508037 Thu Jul 14 11:44:58 2016 -0700
    Removing Patch 1 track after release of patch 4 track, refs #16414
    
• src/hg/makeDb/trackDb/trackDb.ra
  • lines changed 3, context: html, text, full: html, text
    4f4b670a53ab613f254bd5b2da088490bcbacbf0 Thu Jul 14 15:31:05 2016 -0700
    Changing longLabels for NCBI RefSeq tracks, refs #13673
    
• src/utils/qa/bigPush.sh
  • lines changed 61, context: html, text, full: html, text
    f898118e25b9d795f31f1839c87f0ed57fc44a3c Fri Jul 15 15:16:33 2016 -0700
    Changes to argument structure. Database and tables are now required positional arugments, rather than options. Re-did usage message to reflect this. Changed verbose option, no longer outputs to file, just stdout. Added quotes around variables in different placesat Jonathan's recommendation, no redmine