Commits for mspeir

v336_preview to v336_preview2 (2016-07-11 to 2016-07-18) v336

a08ae07aa4dac2ed4abdeeea29622a8b3553de23 Wed Jul 13 10:01:51 2016 -0700

• Adjusting minCheck levels for two gencode tracks, refs #17626
  
  • src/hg/makeDb/schema/all.joiner - lines changed 2, context: html, text, full: html, text

f70417672c7568a9dc43fcd7a18d72f140fc3386 Wed Jul 13 10:07:13 2016 -0700

• Reomving line from makedoc about not releasing to the RR since we are releasing the track, refs #17626
  
  • src/hg/makeDb/doc/hg38/hg38.txt - lines changed 1, context: html, text, full: html, text

d60f6f78bfcd61b7dfcd8852d8a040649239b471 Thu Jul 14 11:43:29 2016 -0700

• Minor link and whitespace changes to APPRIS section. Change version number link for v24 page. Other White space changes. mostly refs #17626
  
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV20.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV21.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV22.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV23.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV24.html - lines changed 6, context: html, text, full: html, text

670857293f0380213d401db9bb36b85350508037 Thu Jul 14 11:44:58 2016 -0700

• Removing Patch 1 track after release of patch 4 track, refs #16414
  
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 1, context: html, text, full: html, text

657177218ce0458c211e9a800bf98e7abe9763de Thu Jul 14 14:37:39 2016 -0700

• Hiding old GENCODE track, refs #17626
  
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV23.ra - lines changed 1, context: html, text, full: html, text

4f4b670a53ab613f254bd5b2da088490bcbacbf0 Thu Jul 14 15:31:05 2016 -0700

• Changing longLabels for NCBI RefSeq tracks, refs #13673
  
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 3, context: html, text, full: html, text

2f39e2335315cd28bf865c953a6b786f97539585 Fri Jul 15 14:29:40 2016 -0700

• Updating example hg.conf. User noted it wasnt enough to use some utils. refs #17652
  
  • src/hg/htdocs/goldenPath/help/mysql.html - lines changed 5, context: html, text, full: html, text

f898118e25b9d795f31f1839c87f0ed57fc44a3c Fri Jul 15 15:16:33 2016 -0700

• Changes to argument structure. Database and tables are now required positional arugments, rather than options. Re-did usage message to reflect this. Changed verbose option, no longer outputs to file, just stdout. Added quotes around variables in different placesat Jonathan's recommendation, no redmine
  
  • src/utils/qa/bigPush.sh - lines changed 61, context: html, text, full: html, text