File Changes for markd

v336_base to v337_preview (2016-07-25 to 2016-08-01) v337

• src/hg/utils/automation/makefile
  • lines changed 2, context: html, text, full: html, text
    5a1a3cdf1fc42cd842e06272245cccf4eb373b1a Sat Jul 30 07:50:40 2016 -0700
    fixed syntax error in makefile
    
• src/hg/utils/gff3ToGenePred/gff3ToGenePred.c
  • lines changed 147, context: html, text, full: html, text
    b53a2520706ff46e405ea364f91c92bd7ade3caa Wed Jul 27 15:31:20 2016 -0700
    Fixed problem with gff3ToGenePred where +1 and -1 translational
    frame shifts were not correctly encoded. This resulted in
    downstream CDS being frameshifted. This will split genePred exons
    blocks to allow correct representation.
    
    The output has been verified against the previous version
    of the program and all differences manually verified.
    
• src/hg/utils/gff3ToGenePred/tests/expected/frameShiftTest.gp
  • lines changed 8, context: html, text, full: html, text
    b53a2520706ff46e405ea364f91c92bd7ade3caa Wed Jul 27 15:31:20 2016 -0700
    Fixed problem with gff3ToGenePred where +1 and -1 translational
    frame shifts were not correctly encoded. This resulted in
    downstream CDS being frameshifted. This will split genePred exons
    blocks to allow correct representation.
    
    The output has been verified against the previous version
    of the program and all differences manually verified.
    
• src/hg/utils/gff3ToGenePred/tests/input/frameShifts.gff3
  • lines changed 79, context: html, text, full: html, text
    b53a2520706ff46e405ea364f91c92bd7ade3caa Wed Jul 27 15:31:20 2016 -0700
    Fixed problem with gff3ToGenePred where +1 and -1 translational
    frame shifts were not correctly encoded. This resulted in
    downstream CDS being frameshifted. This will split genePred exons
    blocks to allow correct representation.
    
    The output has been verified against the previous version
    of the program and all differences manually verified.
    
• src/hg/utils/gff3ToGenePred/tests/makefile
  • lines changed 6, context: html, text, full: html, text
    b53a2520706ff46e405ea364f91c92bd7ade3caa Wed Jul 27 15:31:20 2016 -0700
    Fixed problem with gff3ToGenePred where +1 and -1 translational
    frame shifts were not correctly encoded. This resulted in
    downstream CDS being frameshifted. This will split genePred exons
    blocks to allow correct representation.
    
    The output has been verified against the previous version
    of the program and all differences manually verified.