Commits for markd

v336_base to v337_preview (2016-07-25 to 2016-08-01) v337

b53a2520706ff46e405ea364f91c92bd7ade3caa Wed Jul 27 15:31:20 2016 -0700

• Fixed problem with gff3ToGenePred where +1 and -1 translational
  frame shifts were not correctly encoded. This resulted in
  downstream CDS being frameshifted. This will split genePred exons
  blocks to allow correct representation.
  
  The output has been verified against the previous version
  of the program and all differences manually verified.
  
  • src/hg/utils/gff3ToGenePred/gff3ToGenePred.c - lines changed 147, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/expected/frameShiftTest.gp - lines changed 8, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/input/frameShifts.gff3 - lines changed 79, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/makefile - lines changed 6, context: html, text, full: html, text

5a1a3cdf1fc42cd842e06272245cccf4eb373b1a Sat Jul 30 07:50:40 2016 -0700

• fixed syntax error in makefile
  
  • src/hg/utils/automation/makefile - lines changed 2, context: html, text, full: html, text