File Changes for kate

v338_preview to v338_preview2 (2016-08-22 to 2016-08-29) v338

• src/hg/hgGene/gtex.c
  • lines changed 5, context: html, text, full: html, text
    13d5f7b0d091ed228affad0262face3167f00d2e Wed Aug 24 14:52:52 2016 -0700
    Gene page link to browser from GTEx section now includes gene position, so if launched from other than browser (e.g. Gene Sorter) it will show gene region. refs #17288
    
• src/hg/hgTracks/gtexTracks.c
  • lines changed 44, context: html, text, full: html, text
    5a63b70b7e8405a187c8fba71c557cca655e0424 Wed Aug 24 12:17:38 2016 -0700
    Add config option to display ENS geneId. For synergy with new GTEx gene sorter column. refs #17288
    
• src/hg/hgc/gtexClick.c
  • lines changed 2, context: html, text, full: html, text
    293923a610a014d169a8b4c83a3d91719aab942c Wed Aug 24 14:54:08 2016 -0700
    Comment out broken link to GTEx portal. Broad has been alerted.
    
• src/hg/inc/gtexUi.h
  • lines changed 7, context: html, text, full: html, text
    5a63b70b7e8405a187c8fba71c557cca655e0424 Wed Aug 24 12:17:38 2016 -0700
    Add config option to display ENS geneId. For synergy with new GTEx gene sorter column. refs #17288
    
• src/hg/lib/gtexUi.c
  • lines changed 14, context: html, text, full: html, text
    5a63b70b7e8405a187c8fba71c557cca655e0424 Wed Aug 24 12:17:38 2016 -0700
    Add config option to display ENS geneId. For synergy with new GTEx gene sorter column. refs #17288
    
• src/hg/makeDb/outside/gtexAnalysis/hub/gtexAnalysisHub.html
  • lines changed 12, context: html, text, full: html, text
    b47c3859109f101d73130bdaa4c1672d8170fac6 Thu Aug 25 10:12:52 2016 -0700
    Doc updates after QA review. refs #17885
    
  • lines changed 1, context: html, text, full: html, text
    69e9d519e0408cd6cb9cf58ac2493e2c93b732ad Thu Aug 25 13:26:34 2016 -0700
    Spelling fix. Thanks Chris. refs #17885
    
• src/hg/makeDb/outside/gtexAnalysis/hub/gtexAse.html
  • lines changed 5, context: html, text, full: html, text
    35c3ea759b6c694c8abade61042af14d462ce87d Thu Aug 25 09:19:11 2016 -0700
    Hack to allow QA before push to hgdownload. refs 17885
    
  • lines changed 20, context: html, text, full: html, text
    b47c3859109f101d73130bdaa4c1672d8170fac6 Thu Aug 25 10:12:52 2016 -0700
    Doc updates after QA review. refs #17885
    
• src/hg/makeDb/outside/gtexAnalysis/hub/hg19/trackDb.txt
  • lines changed 1, context: html, text, full: html, text
    b47c3859109f101d73130bdaa4c1672d8170fac6 Thu Aug 25 10:12:52 2016 -0700
    Doc updates after QA review. refs #17885
    
• src/hg/makeDb/outside/gtexAnalysis/hub/hg38/trackDb.txt
  • lines changed 1, context: html, text, full: html, text
    b47c3859109f101d73130bdaa4c1672d8170fac6 Thu Aug 25 10:12:52 2016 -0700
    Doc updates after QA review. refs #17885
    
• src/hg/makeDb/outside/gtexAnalysis/hub/hub.txt
  • lines changed 2, context: html, text, full: html, text
    4420faa925598081c2482af373656eda2deb28a8 Thu Aug 25 17:04:53 2016 -0700
    Fix hub description url. refs #17885
    
• src/hg/near/hgNear/expRatio.c
  • lines changed 2, context: html, text, full: html, text
    c409aec3f90ff73e701681865ad4f4a0702bd4d1 Wed Aug 24 10:25:25 2016 -0700
    Friendlier configuration option for GTEx. refs #17288
    
• src/hg/near/hgNear/hgNearData/Human/columnDb.ra
  • lines changed 1, context: html, text, full: html, text
    f83f1af5fb9fe70b0002aa22820b913a1a3a6ef9 Mon Aug 22 12:31:25 2016 -0700
    Divide brain tissue section for easier viewing
    
  • lines changed 9, context: html, text, full: html, text
    50fc0b07eab1460b39d62c18a1906caf5f99f210 Wed Aug 24 13:55:37 2016 -0700
    Add column for GTEx Gene ID (ENS). To facilitate comparison with GTEx gene track. refs #17288
    
  • lines changed 1, context: html, text, full: html, text
    61562f06e83e4c4f24f759aed47342a499f5c736 Wed Aug 24 15:37:02 2016 -0700
    Lower GTEx max val to enhance signal in Gene Sorter. refs #17288
    
  • lines changed 1, context: html, text, full: html, text
    f2d118b97ee011247fdc735231bafcc05f1e44ef Wed Aug 24 16:09:24 2016 -0700
    Tuning GTEx distance and ratio tables for Gene Sorter. refs #17288
    
• src/hg/near/hgNear/hgNearData/Human/gtex.html
  • lines changed 58, context: html, text, full: html, text
    16c6acace66762d4716b2e8b58a1c0059034238c Wed Aug 24 10:16:41 2016 -0700
    Add doc for GTEx gene sorter column. refs #17288
    
• src/hg/near/hgNear/hgNearData/Human/gtexDistance.html
  • lines changed 11, context: html, text, full: html, text
    2c3c3eb4e95ac1e2ec067e8ade8b24bcdff946ce Thu Aug 25 11:53:37 2016 -0700
    Add doc for remaining GTEx Gene Sorter columns. refs #17288
    
• src/hg/near/hgNear/hgNearData/Human/gtexId.html
  • lines changed 4, context: html, text, full: html, text
    2c3c3eb4e95ac1e2ec067e8ade8b24bcdff946ce Thu Aug 25 11:53:37 2016 -0700
    Add doc for remaining GTEx Gene Sorter columns. refs #17288
    
• src/hg/near/makeNear.doc
  • lines changed 20, context: html, text, full: html, text
    bbde9065c89d41d21aa1df29d04b5892fc4af4e0 Wed Aug 24 10:24:57 2016 -0700
    Update table names in doc. refs #17288
    
  • lines changed 7, context: html, text, full: html, text
    f2d118b97ee011247fdc735231bafcc05f1e44ef Wed Aug 24 16:09:24 2016 -0700
    Tuning GTEx distance and ratio tables for Gene Sorter. refs #17288
    
  • lines changed 7, context: html, text, full: html, text
    8f85cfb621850ffe710909abca6d8d91cd1b8929 Thu Aug 25 13:02:46 2016 -0700
    Add hg38 tables to Gene Sorter. refs #17288