File Changes for max

v341_base to v342_preview (2016-11-07 to 2016-11-14) v342

• README
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    c6961a123a07b21da18ad03045e4733b8f3496ac Tue Nov 8 14:42:07 2016 -0800
    adding goOnline to -f gbic mode, email from chmalee, no redmine
  • lines changed 3, context: html, text, full: html, text
    351524f39932ad70de5a3a5920a71e425531cfb6 Tue Nov 8 14:45:02 2016 -0800
    Reverting last (messed up) commit "adding goOnline to -f gbic mode, email from chmalee, no redmine" This reverts commit c6961a123a07b21da18ad03045e4733b8f3496ac.
• src/hg/cirm/cdw/cdwGetFile/cdwGetFile.c
  • lines changed 56, context: html, text, full: html, text
    c6961a123a07b21da18ad03045e4733b8f3496ac Tue Nov 8 14:42:07 2016 -0800
    adding goOnline to -f gbic mode, email from chmalee, no redmine
  • lines changed 56, context: html, text, full: html, text
    351524f39932ad70de5a3a5920a71e425531cfb6 Tue Nov 8 14:45:02 2016 -0800
    Reverting last (messed up) commit "adding goOnline to -f gbic mode, email from chmalee, no redmine" This reverts commit c6961a123a07b21da18ad03045e4733b8f3496ac.
• src/hg/cirm/cdw/cdwSummary/cdwSummary
  • lines changed 22, context: html, text, full: html, text
    c6961a123a07b21da18ad03045e4733b8f3496ac Tue Nov 8 14:42:07 2016 -0800
    adding goOnline to -f gbic mode, email from chmalee, no redmine
  • lines changed 22, context: html, text, full: html, text
    351524f39932ad70de5a3a5920a71e425531cfb6 Tue Nov 8 14:45:02 2016 -0800
    Reverting last (messed up) commit "adding goOnline to -f gbic mode, email from chmalee, no redmine" This reverts commit c6961a123a07b21da18ad03045e4733b8f3496ac.
  • lines changed 231, context: html, text, full: html, text
    a8fff85a54441b2e938c2202005abd6633f58c10 Thu Nov 10 22:21:29 2016 -0800
    CIRM: adding vcf option to cdwSummary
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    9b2ed714d434316bc052e4473fd52c7f77516468 Fri Nov 11 00:50:53 2016 -0800
    CIRM: fixing merge conflict in cdwSummary
• src/hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c
  • lines changed 13, context: html, text, full: html, text
    c6961a123a07b21da18ad03045e4733b8f3496ac Tue Nov 8 14:42:07 2016 -0800
    adding goOnline to -f gbic mode, email from chmalee, no redmine
  • lines changed 13, context: html, text, full: html, text
    351524f39932ad70de5a3a5920a71e425531cfb6 Tue Nov 8 14:45:02 2016 -0800
    Reverting last (messed up) commit "adding goOnline to -f gbic mode, email from chmalee, no redmine" This reverts commit c6961a123a07b21da18ad03045e4733b8f3496ac.
• src/hg/hgTracks/hgTracks.c
  • lines changed 6, context: html, text, full: html, text
    9e064b7c08551b56508ae9f7e0b0573d7be7101b Tue Nov 8 11:03:09 2016 -0800
    adding keyboard shortcuts for zoom to x bp, no redmine. This message was approved by cmalee and mspeir
• src/hg/js/hgTracks.js
  • lines changed 11, context: html, text, full: html, text
    9e064b7c08551b56508ae9f7e0b0573d7be7101b Tue Nov 8 11:03:09 2016 -0800
    adding keyboard shortcuts for zoom to x bp, no redmine. This message was approved by cmalee and mspeir
  • lines changed 5, context: html, text, full: html, text
    7a900c00cc6f3f7bc046dac0f6c8432394c8a43d Tue Nov 8 16:08:24 2016 -0800
    fix to zoom shortcuts for multi-exon mode, refs #18367
• src/hg/lib/trackHub.c
  • lines changed 7, context: html, text, full: html, text
    9a685f7b0fde1b55268aadea67906197c9bacb19 Tue Nov 8 10:51:16 2016 -0800
    allowing hub+genomes+trackDb all in the hub.txt file for track hubs. I am just me, but BrianR and Hiram have approved this message. No redmine.
• src/hg/makeDb/crisprTrack/convOffs.py
  • lines changed 6, context: html, text, full: html, text
    c6961a123a07b21da18ad03045e4733b8f3496ac Tue Nov 8 14:42:07 2016 -0800
    adding goOnline to -f gbic mode, email from chmalee, no redmine
  • lines changed 6, context: html, text, full: html, text
    351524f39932ad70de5a3a5920a71e425531cfb6 Tue Nov 8 14:45:02 2016 -0800
    Reverting last (messed up) commit "adding goOnline to -f gbic mode, email from chmalee, no redmine" This reverts commit c6961a123a07b21da18ad03045e4733b8f3496ac.
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 3, context: html, text, full: html, text
    726285f0411018a0a132b0ad85256cd05ea79740 Fri Nov 11 01:56:15 2016 -0800
    tweaking the clinvar track name a bit
• src/hg/utils/automation/makefile
  • lines changed 0, context: html, text, full: html, text
    c6961a123a07b21da18ad03045e4733b8f3496ac Tue Nov 8 14:42:07 2016 -0800
    adding goOnline to -f gbic mode, email from chmalee, no redmine
  • lines changed 0, context: html, text, full: html, text
    351524f39932ad70de5a3a5920a71e425531cfb6 Tue Nov 8 14:45:02 2016 -0800
    Reverting last (messed up) commit "adding goOnline to -f gbic mode, email from chmalee, no redmine" This reverts commit c6961a123a07b21da18ad03045e4733b8f3496ac.
• src/hg/utils/otto/clinvar/clinVarToBed
  • lines changed 104, context: html, text, full: html, text
    c388d3b08b827858adaf88bfbf47de558a2c2794 Fri Nov 11 00:46:06 2016 -0800
    fixing the clinvar parser again, info is spread over four files and fields have changed their meanings. no redmine yet.
• src/hg/utils/otto/clinvar/clinvar.as
  • lines changed 3, context: html, text, full: html, text
    c388d3b08b827858adaf88bfbf47de558a2c2794 Fri Nov 11 00:46:06 2016 -0800
    fixing the clinvar parser again, info is spread over four files and fields have changed their meanings. no redmine yet.
• src/lib/udc.c
  • lines changed 27, context: html, text, full: html, text
    c6961a123a07b21da18ad03045e4733b8f3496ac Tue Nov 8 14:42:07 2016 -0800
    adding goOnline to -f gbic mode, email from chmalee, no redmine
  • lines changed 27, context: html, text, full: html, text
    351524f39932ad70de5a3a5920a71e425531cfb6 Tue Nov 8 14:45:02 2016 -0800
    Reverting last (messed up) commit "adding goOnline to -f gbic mode, email from chmalee, no redmine" This reverts commit c6961a123a07b21da18ad03045e4733b8f3496ac.
• src/product/installer/browserSetup.sh
  • lines changed 1, context: html, text, full: html, text
    c6961a123a07b21da18ad03045e4733b8f3496ac Tue Nov 8 14:42:07 2016 -0800
    adding goOnline to -f gbic mode, email from chmalee, no redmine
  • lines changed 1, context: html, text, full: html, text
    351524f39932ad70de5a3a5920a71e425531cfb6 Tue Nov 8 14:45:02 2016 -0800
    Reverting last (messed up) commit "adding goOnline to -f gbic mode, email from chmalee, no redmine" This reverts commit c6961a123a07b21da18ad03045e4733b8f3496ac.
  • lines changed 1, context: html, text, full: html, text
    de3b2529bc5088bc5904668fe8df77fe094c7b4c Tue Nov 8 14:53:08 2016 -0800
    fixing bug in gbic that forgot to go online with -f, email from chmalee
  • lines changed 12, context: html, text, full: html, text
    ce085e02ed3fe243f81020097ae3223bf5e3eff4 Wed Nov 9 15:53:07 2016 -0800
    adding addTools to gbic as suggested during genecats
  • lines changed 2, context: html, text, full: html, text
    444bb812892554802f588fdd08c9eeed31c67aea Wed Nov 9 17:05:26 2016 -0800
    fixing gbic docs a little more
  • lines changed 1, context: html, text, full: html, text
    f8e4ee48594ecaf00822d5f6cf05d9b49edd4923 Wed Nov 9 17:41:47 2016 -0800
    making sure we have wget in gbic
  • lines changed 1, context: html, text, full: html, text
    24559b24bec659aef90535e3d59022e4845b4b8e Wed Nov 9 19:25:15 2016 -0800
    making sure we have rsync in gbic
  • lines changed 1, context: html, text, full: html, text
    a171a8645402cca29ff90a17978ea12c74ad5f5f Wed Nov 9 21:19:32 2016 -0800
    skipping ENCODE PDF files in gbic
  • lines changed 1, context: html, text, full: html, text
    83705d755e68321c3d5f9d64f748f10010e4ea37 Wed Nov 9 21:34:13 2016 -0800
    fixing rsync command in gbic again