Commits for max

v341_base to v342_preview (2016-11-07 to 2016-11-14) v342

9a685f7b0fde1b55268aadea67906197c9bacb19 Tue Nov 8 10:51:16 2016 -0800

• allowing hub+genomes+trackDb all in the hub.txt file for track hubs. I am just me, but BrianR and Hiram have approved this message. No redmine.
  • src/hg/lib/trackHub.c - lines changed 7, context: html, text, full: html, text

9e064b7c08551b56508ae9f7e0b0573d7be7101b Tue Nov 8 11:03:09 2016 -0800

• adding keyboard shortcuts for zoom to x bp, no redmine. This message was approved by cmalee and mspeir
  • src/hg/hgTracks/hgTracks.c - lines changed 6, context: html, text, full: html, text
  • src/hg/js/hgTracks.js - lines changed 11, context: html, text, full: html, text

c6961a123a07b21da18ad03045e4733b8f3496ac Tue Nov 8 14:42:07 2016 -0800

• adding goOnline to -f gbic mode, email from chmalee, no redmine
  • README - lines changed 3, context: html, text, full: html, text
  • src/hg/cirm/cdw/cdwGetFile/cdwGetFile.c - lines changed 56, context: html, text, full: html, text
  • src/hg/cirm/cdw/cdwSummary/cdwSummary - lines changed 22, context: html, text, full: html, text
  • src/hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/crisprTrack/convOffs.py - lines changed 6, context: html, text, full: html, text
  • src/hg/utils/automation/makefile - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/lib/udc.c - lines changed 27, context: html, text, full: html, text
  • src/product/installer/browserSetup.sh - lines changed 1, context: html, text, full: html, text

351524f39932ad70de5a3a5920a71e425531cfb6 Tue Nov 8 14:45:02 2016 -0800

• Reverting last (messed up) commit "adding goOnline to -f gbic mode, email from chmalee, no redmine" This reverts commit c6961a123a07b21da18ad03045e4733b8f3496ac.
  • README - lines changed 3, context: html, text, full: html, text
  • src/hg/cirm/cdw/cdwGetFile/cdwGetFile.c - lines changed 56, context: html, text, full: html, text
  • src/hg/cirm/cdw/cdwSummary/cdwSummary - lines changed 22, context: html, text, full: html, text
  • src/hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/crisprTrack/convOffs.py - lines changed 6, context: html, text, full: html, text
  • src/hg/utils/automation/makefile - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/lib/udc.c - lines changed 27, context: html, text, full: html, text
  • src/product/installer/browserSetup.sh - lines changed 1, context: html, text, full: html, text

de3b2529bc5088bc5904668fe8df77fe094c7b4c Tue Nov 8 14:53:08 2016 -0800

• fixing bug in gbic that forgot to go online with -f, email from chmalee
  • src/product/installer/browserSetup.sh - lines changed 1, context: html, text, full: html, text

7a900c00cc6f3f7bc046dac0f6c8432394c8a43d Tue Nov 8 16:08:24 2016 -0800

• fix to zoom shortcuts for multi-exon mode, refs #18367
  • src/hg/js/hgTracks.js - lines changed 5, context: html, text, full: html, text

ce085e02ed3fe243f81020097ae3223bf5e3eff4 Wed Nov 9 15:53:07 2016 -0800

• adding addTools to gbic as suggested during genecats
  • src/product/installer/browserSetup.sh - lines changed 12, context: html, text, full: html, text

444bb812892554802f588fdd08c9eeed31c67aea Wed Nov 9 17:05:26 2016 -0800

• fixing gbic docs a little more
  • src/product/installer/browserSetup.sh - lines changed 2, context: html, text, full: html, text

f8e4ee48594ecaf00822d5f6cf05d9b49edd4923 Wed Nov 9 17:41:47 2016 -0800

• making sure we have wget in gbic
  • src/product/installer/browserSetup.sh - lines changed 1, context: html, text, full: html, text

24559b24bec659aef90535e3d59022e4845b4b8e Wed Nov 9 19:25:15 2016 -0800

• making sure we have rsync in gbic
  • src/product/installer/browserSetup.sh - lines changed 1, context: html, text, full: html, text

a171a8645402cca29ff90a17978ea12c74ad5f5f Wed Nov 9 21:19:32 2016 -0800

• skipping ENCODE PDF files in gbic
  • src/product/installer/browserSetup.sh - lines changed 1, context: html, text, full: html, text

83705d755e68321c3d5f9d64f748f10010e4ea37 Wed Nov 9 21:34:13 2016 -0800

• fixing rsync command in gbic again
  • src/product/installer/browserSetup.sh - lines changed 1, context: html, text, full: html, text

b9f1888b84a3aac33abd0602e3957db35df5b274 Thu Nov 10 13:37:52 2016 -0800

• fixing merge conflict in gbic

a8fff85a54441b2e938c2202005abd6633f58c10 Thu Nov 10 22:21:29 2016 -0800

• CIRM: adding vcf option to cdwSummary
  • src/hg/cirm/cdw/cdwSummary/cdwSummary - lines changed 231, context: html, text, full: html, text

c388d3b08b827858adaf88bfbf47de558a2c2794 Fri Nov 11 00:46:06 2016 -0800

• fixing the clinvar parser again, info is spread over four files and fields have changed their meanings. no redmine yet.
  • src/hg/utils/otto/clinvar/clinVarToBed - lines changed 104, context: html, text, full: html, text
  • src/hg/utils/otto/clinvar/clinvar.as - lines changed 3, context: html, text, full: html, text

9b2ed714d434316bc052e4473fd52c7f77516468 Fri Nov 11 00:50:53 2016 -0800

• CIRM: fixing merge conflict in cdwSummary
  • src/hg/cirm/cdw/cdwSummary/cdwSummary - lines changed 26, context: html, text, full: html, text

726285f0411018a0a132b0ad85256cd05ea79740 Fri Nov 11 01:56:15 2016 -0800

• tweaking the clinvar track name a bit
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 3, context: html, text, full: html, text