Commits for hiram

v342_base to v343_preview (2016-12-05 to 2016-12-19) v343

cd9fdf441b73c9497c8d4d80c98c8cd936a9100e Mon Dec 5 10:49:00 2016 -0800

• updated references refs #18440
  • src/hg/makeDb/trackDb/mouseStrains.html - lines changed 23, context: html, text, full: html, text

512facd3554fb1943a0debdcc424e3af752ef7ce Mon Dec 5 15:00:12 2016 -0800

• running up hg38Patch9 refs #18274
  • src/hg/makeDb/doc/hg38/hg38Patch9.txt - lines changed 918, context: html, text, full: html, text

aac4d652ce81983b8107fc22a8f86a09193d81d9 Tue Dec 6 11:24:44 2016 -0800

• adding hg38Patch9 to the build refs #18274
  • src/hg/makeDb/trackDb/human/hg38Patch9/description.html - lines changed 63, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38Patch9/gap.html - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38Patch9/gold.html - lines changed 37, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38Patch9/trackDb.ra - lines changed 38, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text

ec1e1a8658a50bbaeb99edb3d042833d9745419e Tue Dec 6 11:39:23 2016 -0800

• adding hg38Patch9 definitions refs #18274
  • src/hg/makeDb/trackDb/human/hg38/hg38Patch9.html - lines changed 521, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/hg38Patch9.ra - lines changed 118, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text

dccf1cf20c81862bcdc8337958383e08e7dc2409 Tue Dec 6 11:47:48 2016 -0800

• adding rules for hg38Patch9 refs #18274
  • src/hg/makeDb/schema/all.joiner - lines changed 9, context: html, text, full: html, text

9c0f463152095051a207201ce8d28eec87a1aaaa Tue Dec 6 13:39:52 2016 -0800

• per Jim request, adding copyright information to a couple README files refs #13978
  • src/README - lines changed 15, context: html, text, full: html, text
  • src/browserbox/README.txt - lines changed 15, context: html, text, full: html, text
  • src/hg/README - lines changed 15, context: html, text, full: html, text
  • src/hg/liftOver/README.txt - lines changed 15, context: html, text, full: html, text
  • src/hg/mouseStuff/README - lines changed 15, context: html, text, full: html, text
  • src/hg/ratStuff/README - lines changed 15, context: html, text, full: html, text

c65d1d60bacfcd3531bee6f3be302b5c30a131b1 Wed Dec 14 11:17:38 2016 -0800

• keep the day of year directory name to 3 digits refs #2811
  • src/hg/lib/trashDir.c - lines changed 1, context: html, text, full: html, text

53ffc1510b9aae25ada3af08937eaee731e8bd20 Thu Dec 15 15:07:03 2016 -0800

• adding cactus.trackDb to the trackDb
  • src/hg/makeDb/doc/mouseStrains/GCA_001624185.1_129S1_SvImJ_v1/GCA_001624185.1_129S1_SvImJ_v1.trackDb.txt - lines changed 1, context: html, text, full: html, text

bd1541312993bbccb160cb805896d35c44230e4d Thu Dec 15 15:07:03 2016 -0800

• adding cactus.trackDb to the trackDb
  • src/hg/makeDb/doc/mouseStrains/GCA_001624215.1_A_J_v1/GCA_001624215.1_A_J_v1.trackDb.txt - lines changed 1, context: html, text, full: html, text

16d1fef33888328cafb7364e3db38022ee597caa Thu Dec 15 15:07:04 2016 -0800

• adding cactus.trackDb to the trackDb
  • src/hg/makeDb/doc/mouseStrains/GCA_001624295.1_AKR_J_v1/GCA_001624295.1_AKR_J_v1.trackDb.txt - lines changed 1, context: html, text, full: html, text

2e37e2d9bebb1fbcd5e9ccae2c22ba6f4b8d9463 Thu Dec 15 15:07:05 2016 -0800

• adding cactus.trackDb to the trackDb
  • src/hg/makeDb/doc/mouseStrains/GCA_001624445.1_CAST_EiJ_v1/GCA_001624445.1_CAST_EiJ_v1.trackDb.txt - lines changed 1, context: html, text, full: html, text

9c1b62c1487a7563ff0b02253f71089688229c0c Thu Dec 15 15:07:06 2016 -0800

• adding cactus.trackDb to the trackDb
  • src/hg/makeDb/doc/mouseStrains/GCA_001624475.1_CBA_J_v1/GCA_001624475.1_CBA_J_v1.trackDb.txt - lines changed 1, context: html, text, full: html, text

787663b916f5b3f740d3fc1eeca578ccbb7e1b93 Thu Dec 15 15:07:07 2016 -0800

• adding cactus.trackDb to the trackDb
  • src/hg/makeDb/doc/mouseStrains/GCA_001624505.1_DBA_2J_v1/GCA_001624505.1_DBA_2J_v1.trackDb.txt - lines changed 1, context: html, text, full: html, text

9fd446f8fbe4cc86f0b558bc4e2d7f207f30edd6 Thu Dec 15 15:07:08 2016 -0800

• adding cactus.trackDb to the trackDb
  • src/hg/makeDb/doc/mouseStrains/GCA_001624535.1_FVB_NJ_v1/GCA_001624535.1_FVB_NJ_v1.trackDb.txt - lines changed 1, context: html, text, full: html, text

b8e1bc656e5965d2cf04c7efb38f7da9a0fbd63a Thu Dec 15 15:07:09 2016 -0800

• adding cactus.trackDb to the trackDb
  • src/hg/makeDb/doc/mouseStrains/GCA_001624675.1_NOD_ShiLtJ_v1/GCA_001624675.1_NOD_ShiLtJ_v1.trackDb.txt - lines changed 1, context: html, text, full: html, text

b534a50640fa7c89eccb4c8070e711b033c37c52 Thu Dec 15 15:07:10 2016 -0800

• adding cactus.trackDb to the trackDb
  • src/hg/makeDb/doc/mouseStrains/GCA_001624745.1_NZO_HlLtJ_v1/GCA_001624745.1_NZO_HlLtJ_v1.trackDb.txt - lines changed 1, context: html, text, full: html, text

c816846b559ff41c484068f54d919e507f72ccc7 Thu Dec 15 15:07:11 2016 -0800

• adding cactus.trackDb to the trackDb
  • src/hg/makeDb/doc/mouseStrains/GCA_001624775.1_PWK_PhJ_v1/GCA_001624775.1_PWK_PhJ_v1.trackDb.txt - lines changed 1, context: html, text, full: html, text

f530058c0a7ee043b91cb39586d4f0f55f9b07e1 Thu Dec 15 15:07:13 2016 -0800

• adding cactus.trackDb to the trackDb
  • src/hg/makeDb/doc/mouseStrains/GCA_001624835.1_WSB_EiJ_v1/GCA_001624835.1_WSB_EiJ_v1.trackDb.txt - lines changed 1, context: html, text, full: html, text

4b787d7053f66e72a53f7039ac9afca234ccf8a6 Thu Dec 15 15:07:15 2016 -0800

• adding cactus.trackDb to the trackDb
  • src/hg/makeDb/doc/mouseStrains/GCA_001624865.1_SPRET_EiJ_v1/GCA_001624865.1_SPRET_EiJ_v1.trackDb.txt - lines changed 1, context: html, text, full: html, text

2b249c5b1893cdb28d4efa0336a51315e0e5f3bf Thu Dec 15 15:07:16 2016 -0800

• adding cactus.trackDb to the trackDb
  • src/hg/makeDb/doc/mouseStrains/GCA_001632525.1_BALB_cJ_v1/GCA_001632525.1_BALB_cJ_v1.trackDb.txt - lines changed 1, context: html, text, full: html, text

a535d0f45a4bb8e4c518d0589aa016fd4ae6cd8a Thu Dec 15 15:07:17 2016 -0800

• adding cactus.trackDb to the trackDb
  • src/hg/makeDb/doc/mouseStrains/GCA_001632555.1_C57BL_6NJ_v1/GCA_001632555.1_C57BL_6NJ_v1.trackDb.txt - lines changed 1, context: html, text, full: html, text

8a852d389dded9e22f2e2c3486d125cd6edf5f02 Thu Dec 15 15:07:17 2016 -0800

• adding cactus.trackDb to the trackDb
  • src/hg/makeDb/doc/mouseStrains/GCA_001632575.1_C3H_HeJ_v1/GCA_001632575.1_C3H_HeJ_v1.trackDb.txt - lines changed 1, context: html, text, full: html, text

0986a2c022f2058c1dbb37d9ff7b53f8f736ed31 Thu Dec 15 15:07:18 2016 -0800

• adding cactus.trackDb to the trackDb
  • src/hg/makeDb/doc/mouseStrains/GCA_001632615.1_LP_J_v1/GCA_001632615.1_LP_J_v1.trackDb.txt - lines changed 1, context: html, text, full: html, text

ff63cc15374d62de5c7488ddf0f9a16038931aa4 Thu Dec 15 15:09:29 2016 -0800

• html description for cactus snake track
  • src/hg/makeDb/doc/mouseStrains/mouseStrains.html - lines changed 98, context: html, text, full: html, text

14520408afbbb396717415c7ace90fff7a400bde Thu Dec 15 15:22:54 2016 -0800

• single install location for the rnaSeqStar.html and mouseStrains.html descriptions
  • src/hg/makeDb/doc/mouseStrains/makefile - lines changed 10, context: html, text, full: html, text

a73a283efc30de413d6d040531a98bb111b3a2c5 Mon Dec 19 10:08:23 2016 -0800

• v343 preview1 refs #18555
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text