Commits for kent

v342_base to v343_preview (2016-12-05 to 2016-12-19) v343

530f3e6a088dee15b6ef77d89ab7ea9f8bb70245 Tue Dec 6 17:56:11 2016 -0800

• Simplifying look and reducing number of DOM objects.
  • src/tagStorm/tagStormToHtml/tagStormToHtml.c - lines changed 12, context: html, text, full: html, text

080f3b1ad5610d709b20dad37ada05da41d23700 Tue Dec 6 17:57:52 2016 -0800

• Removing an unused parameter, and adding datasetId to label on dataset page list.
  • src/hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c - lines changed 5, context: html, text, full: html, text

171885f8c06eea0da831433ddafc194712798449 Wed Dec 7 12:28:30 2016 -0800

• Making meta.txt and manifest.txt get their file permissions and groups set.
  • src/hg/cirm/cdw/cdwSubmit/cdwSubmit.c - lines changed 43, context: html, text, full: html, text

a7cca5a01f084ce82e1bc73009fde0c5601d6814 Wed Dec 7 12:30:57 2016 -0800

• Decribing recent changes.
  • src/hg/cirm/cdw/cdwWebBrowse/version.doc - lines changed 6, context: html, text, full: html, text

b8ad24053540b0671424d324770e314a408b4bac Wed Dec 7 12:31:35 2016 -0800

• Adding -id option.
  • src/hg/cirm/cdw/cdwChangeAccess/cdwChangeAccess.c - lines changed 16, context: html, text, full: html, text

ec0f405c412524b4db6ca1363285b7195f571261 Wed Dec 7 12:32:06 2016 -0800

• Adding -id option.
  • src/hg/cirm/cdw/cdwGroupFile/cdwGroupFile.c - lines changed 21, context: html, text, full: html, text

a1ee3cb0f0574ac88b3e35681706d61fff5f3b75 Wed Dec 7 12:32:52 2016 -0800

• Checking error messages we get from overloading library function names.
  • src/hg/oneShot/freen/freen.c - lines changed 9, context: html, text, full: html, text

f41fc48aa625075782b67ef8e41f4538aeedae2f Fri Dec 9 09:25:35 2016 -0800

• Put in code to check for IE, and put up simpler non-javascript page if that is the case. Removed tabs since they are interpreted as 4 spaces not 8 under web browsers javascript debuggers, and so code looks off.
  • src/tagStorm/tagStormToHtml/tagStormToHtml.c - lines changed 5, context: html, text, full: html, text

7953d348a47ca2566d13b9decfe3cf510af971b1 Mon Dec 12 15:14:47 2016 -0800

• oops, vf->id should have been vf->fileId!
  • src/hg/cirm/cdw/cdwGroupFile/cdwGroupFile.c - lines changed 1, context: html, text, full: html, text

009bf8a5c3cd3a699fdcd236119ad69e1924dd8e Wed Dec 14 12:16:07 2016 -0800

• A little program to fix some issues with the ChIP-seq controls and assays tags in the second Frazer lab submission.
  • src/hg/cirm/cdw/oneShot/cdwFixFrazerControls2/cdwFixFrazerControls2.c - lines changed 106, context: html, text, full: html, text
  • src/hg/cirm/cdw/oneShot/cdwFixFrazerControls2/makefile - lines changed 3, context: html, text, full: html, text

0cf014f5ff559c705ef8dd96cca5e637e02ef305 Wed Dec 14 18:50:40 2016 -0800

• A program to massage Frazer metadata tree by moving solo meta stanzas up and adding a sample_label tag.
  • src/hg/cirm/cdw/oneShot/cdwFixFrazer3/cdwFixFrazer3.c - lines changed 127, context: html, text, full: html, text
  • src/hg/cirm/cdw/oneShot/cdwFixFrazer3/makefile - lines changed 3, context: html, text, full: html, text

749dadba2cba56c5cc7b64425048093cee380713 Wed Dec 14 18:52:16 2016 -0800

• Renaming tagStormUpdateTag to tagStanzaUpdateTag for consistency, and adding a new tagStanzaDeleteTag.
  • src/inc/tagStorm.h - lines changed 16, context: html, text, full: html, text
  • src/lib/tagStorm.c - lines changed 26, context: html, text, full: html, text
  • src/tagStorm/tagStormHoist/tagStormHoist.c - lines changed 1, context: html, text, full: html, text

aee231ceb577134cf8df8af1a5385be3629cd248 Wed Dec 14 18:54:27 2016 -0800

• Adding subcellular_localization tag and controlled vocab.
  • src/hg/cirm/cdw/lib/cdwValid.c - lines changed 15, context: html, text, full: html, text

fc1eaa85ad365f4e1eb76372da4189b3b038ddf2 Thu Dec 15 08:01:52 2016 -0800

• Added -one option to hoist just a single tag.
  • src/tagStorm/tagStormHoist/tagStormHoist.c - lines changed 10, context: html, text, full: html, text