File Changes for mspeir

v342_base to v343_preview (2016-12-05 to 2016-12-19) v343

• python/lib/ucscGb/qa/tables/positionalQa.py
  • lines changed 15, context: html, text, full: html, text
    b84bb83ec3c69ff8dfe3b90f5b3385796d914de8 Thu Dec 8 08:58:19 2016 -0800
    qaGbTracks now uses the runBits.csh script to calculate coverage as well as find overlaps with undbridged gaps. All results are still written to the log file. Coverage amounts are extracted from runBits output and written to summary file as before. refs #18054
• python/lib/ucscGb/qa/tables/pslQa.py
  • lines changed 43, context: html, text, full: html, text
    2250228e5a62ab129d2c0a671c907c9b204b2543 Thu Dec 8 08:55:19 2016 -0800
    Changing the way pslCheck is run by qaGbTracks based on markd recommendation that it run a more comprehensive check. Now qaGbTracks will run this comprehensive check for those psl tracks that use the baseColorUseSequence setting and have this set to table or extFile. For all others the standard pslCheck that we have been using is run. refs #17753
• src/hg/htdocs/goldenPath/help/customTrackText.html
  • lines changed 9, context: html, text, full: html, text
    a22173c4332fe37e8cf9a901122138d2e2330488 Thu Dec 15 14:12:37 2016 -0800
    Small updates to track line 'track_primary_table_name' documentation. Linking to Bobs video on finding this table name, refs #7380
• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 1, context: html, text, full: html, text
    e6acda1ce5512cffb02839f7fd690391d980bdff Thu Dec 8 07:13:02 2016 -0800
    Minor grammar correction to baseColorUseSequence section, no redmine
• src/hg/makeDb/trackDb/human/clinvar.html
  • lines changed 1, context: html, text, full: html, text
    9d36b6e00627698ffd2e4d35b8b2f6ffb0430cd2 Mon Dec 12 09:08:08 2016 -0800
    Removing uneeded 'the' based on CR, refs #18479
• src/utils/qa/makefile
  • lines changed 1, context: html, text, full: html, text
    4e729f995f1748a128c557b56c439ba5c22cbd39 Fri Dec 9 10:41:43 2016 -0800
    Adding new public hub contact info scraper to makefile, refs #18316