Commits for kent

5333b9029b14fbbfa51362c5092de30b693ef7e3 Thu Dec 15 08:04:35 2016 -0800

Minor improvement to usage message.
- src/tagStorm/tagStormDeleteTags/tagStormDeleteTags.c - lines changed 1, context: html, text, full: html, text

63a86151d3aeeedebf5b303118f526720e8d39f6 Mon Dec 19 22:15:39 2016 -0800

Making cdwFileTags table use minimum sized database types.
- src/hg/cirm/cdw/cdwMakeFileTags/cdwMakeFileTags.c - lines changed 190, context: html, text, full: html, text

86000a33c9b13f1382c1d8e02388a06d3b81451e Tue Dec 20 11:51:32 2016 -0800

Adding sqlType to the -types output, and putting min before max.
- src/hg/cirm/cdw/cdwMakeFileTags/cdwMakeFileTags.c - lines changed 11, context: html, text, full: html, text

8d9add6559b88bebf9ce119e14b970ab22a5df1e Tue Dec 20 15:11:21 2016 -0800

Improving usage message.
- src/tagStorm/tagStormQuery/tagStormQuery.c - lines changed 19, context: html, text, full: html, text

17325ead43fb0dd51d1adf720f3c982a45e6dc5d Mon Dec 26 12:14:51 2016 -0800

Checking chromosome sizes match declared assembly for bigBed and bigWig files.
- src/hg/cirm/cdw/cdwMakeValidFile/cdwMakeValidFile.c - lines changed 34, context: html, text, full: html, text

29356d0b9520b11bb46d22f5c70b8b1a275b5116 Tue Dec 27 12:06:35 2016 -0800

Removing bamChromInfo structure and the routines to free it. The routine that made it got deleted a while back for some reason, so I'm just tidying up.
- src/inc/bamFile.h - lines changed 14, context: html, text, full: html, text
- src/lib/bamFile.c - lines changed 26, context: html, text, full: html, text

0e468e331193dda588bd7c2151997bbdbd4ef517 Tue Dec 27 12:07:28 2016 -0800

Removing duplicate include file.
- src/hg/encode3/encodeDataWarehouse/utils/edwBamStats/edwBamStats.c - lines changed 1, context: html, text, full: html, text

cb58baca5f7b2918a9f335119f5d679ef09a92c5 Tue Dec 27 12:08:54 2016 -0800

Checking chromosome/assembly agreement for bam files. Improving commenting and error message on similar check for bigWig/bigBed files.
- src/hg/cirm/cdw/cdwMakeValidFile/cdwMakeValidFile.c - lines changed 57, context: html, text, full: html, text