File Changes for kent

v346_preview to v346_preview2 (2017-02-27 to 2017-03-06) v346

• src/hg/cirm/cdw/cdwPublicSubset/cdwPublicSubset.c
  • lines changed 187, context: html, text, full: html, text
    14a1bbd02ef28ebee533c805af275ef1c0ddbf6a Wed Mar 1 18:39:53 2017 -0800
    First cut at public database subsetter.
• src/hg/cirm/cdw/cdwPublicSubset/makefile
  • lines changed 4, context: html, text, full: html, text
    14a1bbd02ef28ebee533c805af275ef1c0ddbf6a Wed Mar 1 18:39:53 2017 -0800
    First cut at public database subsetter.
• src/hg/cirm/cdw/cdwReallyRemoveFiles/cdwReallyRemoveFiles.c
  • lines changed 7, context: html, text, full: html, text
    7cf802aa0be426f0873a71aa3aff1fc5431a1935 Wed Mar 1 18:55:05 2017 -0800
    Changing submitUrl to submitDir since we are all local now.
• src/hg/cirm/cdw/utils/cdwVcfStats/cdwVcfStats.c
  • lines changed 26, context: html, text, full: html, text
    cc23704bb98100f88c225f05f30b8613ba6cf354 Wed Mar 1 18:55:59 2017 -0800
    Got rid of some old slow unused code.
• src/lib/tagStorm.c
  • lines changed 5, context: html, text, full: html, text
    0112fcaa33e4a0c803371bab77a1d3a369c7f72b Mon Feb 6 12:49:54 2017 -0800
    Making tagStanzaUpdateTag put new tags at the end, and also make a verbose message when updating existing tags rather than adding new ones.
• src/lib/vcf.c
  • lines changed 1, context: html, text, full: html, text
    929046d9e4afc5c5f8821cd7acd7cc4e3c48dc00 Wed Mar 1 18:57:11 2017 -0800
    Upping a buffer size so that some Snyder lab VCF files would parse.
• src/tagStorm/tagStormCheck/tagStormCheck.c
  • lines changed 5, context: html, text, full: html, text
    d3e3fba3ca8d8badc78ffdf39897169900b0a91a Wed Mar 1 10:07:48 2017 -0800
    Fixing a bug where things not in schema were tested against last wildcard containing tag specification in schema.
• src/tagStorm/tagStormFromTab/tagStormFromTab.c
  • lines changed 8, context: html, text, full: html, text
    4de4a6a4b26b6555e09b05633795051e93099052 Mon Jan 30 10:57:41 2017 -0800
    Further improving comment that explains overall algorithm.
• src/tagStorm/tagStormInfo/tagStormInfo.c
  • lines changed 3, context: html, text, full: html, text
    f84ef13fe3ea2889a2a84cc136a0a93f3181ed40 Wed Mar 1 18:57:35 2017 -0800
    Improved usage message
• src/tagStorm/tagStormJoinTab/tagStormJoinTab.c
  • lines changed 7, context: html, text, full: html, text
    04d3a51e6b6e93ca59b5f01d29da7dd5cd907ab0 Mon Feb 6 12:50:49 2017 -0800
    Making it so that the append option will update the value of existing tags rather than making new tags.
• src/tagStorm/tagStormReformat/tagStormReformat.c
  • lines changed 17, context: html, text, full: html, text
    aa084934a19cfef4313f17a2a952c8d3e81070c9 Wed Mar 1 18:58:00 2017 -0800
    Added sort and sortOn options.
• src/utils/tabQuery/tabQuery.c
  • lines changed 17, context: html, text, full: html, text
    6d140e6f65c1491b7f6ae406bc4f0acf82cc41d1 Wed Feb 15 12:07:25 2017 -0800
    Making it accept wildcards in field list.