Commits for kent

v346_preview to v346_preview2 (2017-02-27 to 2017-03-06) v346

4de4a6a4b26b6555e09b05633795051e93099052 Mon Jan 30 10:57:41 2017 -0800

• Further improving comment that explains overall algorithm.
  • src/tagStorm/tagStormFromTab/tagStormFromTab.c - lines changed 8, context: html, text, full: html, text

0112fcaa33e4a0c803371bab77a1d3a369c7f72b Mon Feb 6 12:49:54 2017 -0800

• Making tagStanzaUpdateTag put new tags at the end, and also make a verbose message when updating existing tags rather than adding new ones.
  • src/lib/tagStorm.c - lines changed 5, context: html, text, full: html, text

04d3a51e6b6e93ca59b5f01d29da7dd5cd907ab0 Mon Feb 6 12:50:49 2017 -0800

• Making it so that the append option will update the value of existing tags rather than making new tags.
  • src/tagStorm/tagStormJoinTab/tagStormJoinTab.c - lines changed 7, context: html, text, full: html, text

6d140e6f65c1491b7f6ae406bc4f0acf82cc41d1 Wed Feb 15 12:07:25 2017 -0800

• Making it accept wildcards in field list.
  • src/utils/tabQuery/tabQuery.c - lines changed 17, context: html, text, full: html, text

d3e3fba3ca8d8badc78ffdf39897169900b0a91a Wed Mar 1 10:07:48 2017 -0800

• Fixing a bug where things not in schema were tested against last wildcard containing tag specification in schema.
  • src/tagStorm/tagStormCheck/tagStormCheck.c - lines changed 5, context: html, text, full: html, text

14a1bbd02ef28ebee533c805af275ef1c0ddbf6a Wed Mar 1 18:39:53 2017 -0800

• First cut at public database subsetter.
  • src/hg/cirm/cdw/cdwPublicSubset/cdwPublicSubset.c - lines changed 187, context: html, text, full: html, text
  • src/hg/cirm/cdw/cdwPublicSubset/makefile - lines changed 4, context: html, text, full: html, text

7cf802aa0be426f0873a71aa3aff1fc5431a1935 Wed Mar 1 18:55:05 2017 -0800

• Changing submitUrl to submitDir since we are all local now.
  • src/hg/cirm/cdw/cdwReallyRemoveFiles/cdwReallyRemoveFiles.c - lines changed 7, context: html, text, full: html, text

cc23704bb98100f88c225f05f30b8613ba6cf354 Wed Mar 1 18:55:59 2017 -0800

• Got rid of some old slow unused code.
  • src/hg/cirm/cdw/utils/cdwVcfStats/cdwVcfStats.c - lines changed 26, context: html, text, full: html, text

929046d9e4afc5c5f8821cd7acd7cc4e3c48dc00 Wed Mar 1 18:57:11 2017 -0800

• Upping a buffer size so that some Snyder lab VCF files would parse.
  • src/lib/vcf.c - lines changed 1, context: html, text, full: html, text

f84ef13fe3ea2889a2a84cc136a0a93f3181ed40 Wed Mar 1 18:57:35 2017 -0800

• Improved usage message
  • src/tagStorm/tagStormInfo/tagStormInfo.c - lines changed 3, context: html, text, full: html, text

aa084934a19cfef4313f17a2a952c8d3e81070c9 Wed Mar 1 18:58:00 2017 -0800

• Added sort and sortOn options.
  • src/tagStorm/tagStormReformat/tagStormReformat.c - lines changed 17, context: html, text, full: html, text