Commits for braney

v348_preview to v348_preview2 (2017-04-10 to 2017-04-17) v348

965f6d70ac26f0fc37afe89305955c826edbe031 Mon Apr 10 15:03:30 2017 -0700

• allow -long option to faToTwoBit which builds a twoBit file with 64-bit offsets in the index instead of 32-bit offsets. This allows the total amount of stored sequence to be greater than 2Gb
  • src/inc/twoBit.h - lines changed 6, context: html, text, full: html, text
  • src/lib/twoBit.c - lines changed 44, context: html, text, full: html, text
  • src/utils/faToTwoBit/faToTwoBit.c - lines changed 6, context: html, text, full: html, text

b9d0da564a59df8c6aac4f4e28d391edcade591c Wed Apr 12 14:17:46 2017 -0700

• add support for 64-bit indices to twoBitMask
  • src/hg/utils/twoBitMask/twoBitMask.c - lines changed 8, context: html, text, full: html, text
  • src/inc/twoBit.h - lines changed 4, context: html, text, full: html, text
  • src/lib/twoBit.c - lines changed 11, context: html, text, full: html, text

49276ca395ca62c016c08b4fd7bb907d8cf0c4ae Thu Apr 13 10:21:32 2017 -0700

• re-do ucsc gene pfam tracks on hg19
  • src/hg/makeDb/doc/ucscGenes/hg19.ucscGenes14.csh - lines changed 29, context: html, text, full: html, text