Commits for kate
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v348_preview to v348_preview2 (2017-04-10 to 2017-04-17) v348
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df52d842cf575c8b1f250baed87aa0b937f385a8 Thu Jan 26 14:09:50 2017 -0800
- Initial cut of hgTracks and hgTrackUi for new barchart type track (generalization of GTEx gene expression display). refs #18736
- src/hg/hgGtexTrackSettings/hgGtexTrackSettings.c - lines changed 1, context: html, text, full: html, text
- src/hg/hgTracks/barChartTrack.c - lines changed 832, context: html, text, full: html, text
- src/hg/hgTracks/hgTracks.h - lines changed 3, context: html, text, full: html, text
- src/hg/hgTracks/makefile - lines changed 2, context: html, text, full: html, text
- src/hg/hgTracks/simpleTracks.c - lines changed 4, context: html, text, full: html, text
- src/hg/inc/barChartBed.h - lines changed 92, context: html, text, full: html, text
- src/hg/inc/barChartCategory.h - lines changed 84, context: html, text, full: html, text
- src/hg/inc/barChartUi.h - lines changed 55, context: html, text, full: html, text
- src/hg/lib/barChartBed.sql - lines changed 21, context: html, text, full: html, text
- src/hg/lib/barChartCategory.sql - lines changed 14, context: html, text, full: html, text
- src/hg/lib/trackDbCustom.c - lines changed 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 9, context: html, text, full: html, text
- src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text
dea095643fe501ea9923781556921916ceff4d3e Thu Jan 26 14:19:23 2017 -0800
- Initial cut of hgTracks and hgTrackUi for new barchart type track (generalization of GTEx gene expression display). refs #18736
- src/hg/lib/barChartUi.c - lines changed 213, context: html, text, full: html, text
123c8d4678f6008806db4b4ad0f6e541db233f8f Thu Jan 26 14:25:14 2017 -0800
- Initial cut of hgTracks and hgTrackUi for new barchart type track (generalization of GTEx gene expression display). refs #18736
381dc1cd9197dc1d8a4fe910b962104092d2896e Thu Jan 26 14:29:21 2017 -0800
- Initial cut of hgTracks and hgTrackUi for new barchart type track (generalization of GTEx gene expression display). refs #18736
- src/hg/lib/barChartBed.as - lines changed 12, context: html, text, full: html, text
- src/hg/lib/barChartBed.c - lines changed 255, context: html, text, full: html, text
- src/hg/lib/barChartCategory.as - lines changed 8, context: html, text, full: html, text
- src/hg/lib/barChartCategory.c - lines changed 186, context: html, text, full: html, text
0018e1b7a8a017e983d2d1d49b663e0ef987c8ef Thu Jan 26 15:30:14 2017 -0800
- First cut click handler for barChart type tracks. refs #18736
- src/hg/hgc/barChartClick.c - lines changed 74, context: html, text, full: html, text
- src/hg/inc/barChartCategory.h - lines changed 4, context: html, text, full: html, text
- src/hg/lib/barChartCategory.c - lines changed 14, context: html, text, full: html, text
7d13a55b365d2adb10dd4c33e4698b6629170e26 Mon Jan 30 17:44:35 2017 -0800
- Fix interacting UI controls. refs #18736
- src/hg/lib/barChartUi.c - lines changed 4, context: html, text, full: html, text
5ca5c3755e15e3d15a6970e43b08b67c67a74650 Mon Jan 30 18:23:23 2017 -0800
- Back out debug change. refs #19736
06257075cb492d423ed0c96a749ea64e2fe96f61 Wed Feb 1 15:51:33 2017 -0800
- Further work on details page for barchart. refs #18736
- src/hg/hgTracks/barChartTrack.c - lines changed 35, context: html, text, full: html, text
- src/hg/hgc/barChartClick.c - lines changed 3, context: html, text, full: html, text
- src/hg/inc/barChartUi.h - lines changed 23, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 21, context: html, text, full: html, text
- src/hg/makeDb/trackDb/tagTypes.tab - lines changed 3, context: html, text, full: html, text
5ea40f8b2a94c54e3a76e6b9a813f0db928eba90 Wed Feb 1 15:52:04 2017 -0800
- Further work on details page for barchart. refs #18736
- src/hg/lib/barChartUi.c - lines changed 84, context: html, text, full: html, text
5e0bdb430d6071acaa068b9e81d2eac5e52ae228 Thu Feb 16 12:13:29 2017 -0800
- Additional track settings. refs #18736
- src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 10, context: html, text, full: html, text
f9ca7382a7ca668aafe1203bce5fb5f3c311db92 Thu Feb 16 12:17:26 2017 -0800
- Fixing merge conflit
- src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 89, context: html, text, full: html, text
78dd4284dde94c28b93f17cf3dc74dc2d1d53170 Mon Mar 20 13:25:00 2017 -0700
- Merge branch 'master' into barchart
f4aba74550dea6d8548ba891cb9d057eaf6de43e Wed Mar 22 12:30:24 2017 -0700
- Fix bogus color cacheing. Its now per-track
- src/hg/hgTracks/barChartTrack.c - lines changed 36, context: html, text, full: html, text
- src/hg/hgTracks/gtexTracks.c - lines changed 56, context: html, text, full: html, text
8dfdcd894a4961396f7230b1294e25051b8307a5 Wed Mar 22 13:00:19 2017 -0700
- Add barChart type to yet another track type properties checker (should be pulled into a single data structure). This allows full mode to work.
- src/hg/hgTracks/hgTracks.c - lines changed 1, context: html, text, full: html, text
875460a149f066406afaa5e038230342ac8948c4 Wed Mar 22 13:38:47 2017 -0700
- Slightly more informative abort message when track data is formatted badly.
- src/hg/lib/barChartBed.c - lines changed 2, context: html, text, full: html, text
8c929e5cd513a57db841da02fd0ba41310a76610 Wed Mar 22 14:57:03 2017 -0700
- Add mouseovers. refs #18736
- src/hg/hgTracks/barChartTrack.c - lines changed 67, context: html, text, full: html, text
- src/hg/inc/barChartUi.h - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/tagTypes.tab - lines changed 2, context: html, text, full: html, text
a604cf00db3b556b90e1f0b60d7cbef8b81017ec Mon Mar 27 12:32:36 2017 -0700
- Fix reentrancy problem. refs #18736
- src/hg/lib/barChartUi.c - lines changed 6, context: html, text, full: html, text
616062bf13f7e2b83b636936ec237d22caad6d94 Tue Mar 28 21:18:23 2017 -0700
- Add boxplot to details page. Fix colors on track config page. refs #18736
- src/hg/hgc/barChartClick.c - lines changed 133, context: html, text, full: html, text
- src/hg/hgc/hgcData/barChartBoxplot.R - lines changed 70, context: html, text, full: html, text
- src/hg/inc/barChartData.h - lines changed 83, context: html, text, full: html, text
- src/hg/inc/barChartSample.h - lines changed 79, context: html, text, full: html, text
- src/hg/lib/barChartData.as - lines changed 7, context: html, text, full: html, text
- src/hg/lib/barChartData.c - lines changed 174, context: html, text, full: html, text
- src/hg/lib/barChartData.sql - lines changed 13, context: html, text, full: html, text
- src/hg/lib/barChartSample.as - lines changed 6, context: html, text, full: html, text
- src/hg/lib/barChartSample.c - lines changed 162, context: html, text, full: html, text
- src/hg/lib/barChartSample.sql - lines changed 12, context: html, text, full: html, text
- src/hg/lib/barChartUi.c - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 36, context: html, text, full: html, text
8f75eb5c1bea3e902cfe26fc038518c5f0fa6664 Tue Apr 4 10:57:17 2017 -0700
- More informative function header comment
605007ef944244124ff7b60fc9e225416b249c0b Tue Apr 4 10:58:58 2017 -0700
- Fix problem with log transform + view limits controls. Code needed updating for CSP. refs #18736
- src/hg/lib/barChartUi.c - lines changed 9, context: html, text, full: html, text
6dcef0d057b21be3cb1cbe699998764883543c84 Thu Apr 6 16:46:22 2017 -0700
- First cut bigBarChart track type for hubs. Basic function on hgTracks, hgTrackUi, and hgc. Lacks boxplot on details page, custom track support, extra fields
- src/hg/hgTracks/barChartTrack.c - lines changed 5, context: html, text, full: html, text
- src/hg/hgTracks/bedTrack.c - lines changed 48, context: html, text, full: html, text
- src/hg/hgTracks/hgTracks.c - lines changed 6, context: html, text, full: html, text
- src/hg/hgTracks/hgTracks.h - lines changed 6, context: html, text, full: html, text
- src/hg/hgTracks/simpleTracks.c - lines changed 8, context: html, text, full: html, text
- src/hg/hgc/barChartClick.c - lines changed 40, context: html, text, full: html, text
- src/hg/lib/barChartUi.c - lines changed 4, context: html, text, full: html, text
- src/hg/lib/customFactory.c - lines changed 42, context: html, text, full: html, text
- src/hg/lib/trackDbCustom.c - lines changed 3, context: html, text, full: html, text
- src/hg/utils/hubCheck/hubCheck.c - lines changed 2, context: html, text, full: html, text
a1da52d19397eecf35606da80bf69851f97869c6 Thu Apr 6 16:54:10 2017 -0700
- Merge branch 'master' into barchart-hub
549dcd456f5d557e15426176e487f91246363548 Mon Apr 10 17:21:22 2017 -0700
- Better integration with bigBed cod. Fixes loading problem and allows labelFields code to operate (not yet tested). refs #18736
- src/hg/hgTracks/barChartTrack.c - lines changed 21, context: html, text, full: html, text
- src/hg/hgc/barChartClick.c - lines changed 10, context: html, text, full: html, text
- src/hg/inc/barChartBed.h - lines changed 9, context: html, text, full: html, text
- src/hg/lib/barChartBed.as - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
- src/hg/lib/barChartBed.c - lines changed 68, context: html, text, full: html, text
- src/hg/lib/barChartBed.sql - lines changed 1, context: html, text, full: html, text
9636c10bf15ced6d4ef56a4aad3510975eb88b99 Tue Apr 11 09:27:05 2017 -0700
- Use of labelFields requires different itemName handlers for labeling and identification for click-thru. refs #18736
- src/hg/hgTracks/barChartTrack.c - lines changed 10, context: html, text, full: html, text
7c4f3c1acfd16636e8d812338fd612cd5f755f23 Tue Apr 11 10:16:31 2017 -0700
- Add map boxes to graph background (JK request) and item label (for zero-expression items). refs #18736
- src/hg/hgTracks/barChartTrack.c - lines changed 43, context: html, text, full: html, text
aaf7309dce63a05d18d0e639246fd3fa1f030d47 Wed Apr 12 14:11:02 2017 -0700
- Implement boxplot on details version for hub version of track. refs #18736
- src/hg/hgc/barChartClick.c - lines changed 176, context: html, text, full: html, text
- src/hg/inc/barChartBed.h - lines changed 22, context: html, text, full: html, text
- src/hg/lib/barChartBed.c - lines changed 90, context: html, text, full: html, text
- src/hg/lib/barChartBed.sql - lines changed 9, context: html, text, full: html, text
37cdece31345c69c7252ca0f9cfc10183cf579d1 Thu Apr 13 12:47:38 2017 -0700
- Fix map box over white background. refs #18736
- src/hg/hgTracks/barChartTrack.c - lines changed 11, context: html, text, full: html, text
ca96dfa92667ad79f4d247e25befab59cfa90258 Thu Apr 13 12:49:53 2017 -0700
- Add barChartColors setting to allow specifying barchart colors by name. Add HTML color names support to lib. refs #18736
- src/hg/inc/barChartUi.h - lines changed 3, context: html, text, full: html, text
- src/hg/lib/barChartUi.c - lines changed 30, context: html, text, full: html, text
7f8e9125d7280a7d4157cdd859bde38783ab77fb Thu Apr 13 12:51:45 2017 -0700
- Update schema to include offset+len in the data file to support boxplot on details page. refs #18736
- src/hg/lib/barChartBed.as - lines changed 6, context: html, text, full: html, text
cb6adc9dd18ca9fc09373e0e2dac6d7191543029 Thu Apr 13 14:46:24 2017 -0700
- Add support for hex color codes in trackDb setting. refs #18736
a6f9e0e10222729e05e349e994ecf3f24bece3fb Thu Apr 13 14:46:50 2017 -0700
- Add support for hex color codes in trackDb setting. refs #18736
- src/hg/lib/barChartUi.c - lines changed 9, context: html, text, full: html, text
ba8d45a98b6ae5f73493192b0eb0767dbb4f4dd8 Thu Apr 13 14:49:10 2017 -0700
- Fixing merge conflict
ccbc28ce544f211af1ee48e0831da67851c6c672 Fri Apr 14 15:45:24 2017 -0700
- Fix compiler warning from build.
- src/hg/lib/barChartUi.c - lines changed 4, context: html, text, full: html, text
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