Commits for braney

v349_base to v350_preview (2017-05-15 to 2017-05-22) v350

85bd10da37f403d155c4434d90edcd146e682948 Mon May 15 13:03:32 2017 -0700

• add sorting to composite wiggles.
  • src/hg/hgComposite/hgComposite.c - lines changed 3, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c - lines changed 38, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.h - lines changed 3, context: html, text, full: html, text
  • src/hg/hgTracks/imageV2.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hgTracks/imageV2.h - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/makefile - lines changed 3, context: html, text, full: html, text
  • src/hg/hgTracks/makefile.hgRenderTracks - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/multiWig.c - lines changed 15, context: html, text, full: html, text
  • src/hg/hgTracks/wigCommon.h - lines changed 9, context: html, text, full: html, text
  • src/hg/hgTracks/wigTrack.c - lines changed 30, context: html, text, full: html, text
  • src/hg/htdocs/inc/globalNavBar.inc - lines changed 1, context: html, text, full: html, text
  • src/makefile - lines changed 1, context: html, text, full: html, text
  • src/optimalLeaf/Leaf.cc - lines changed 218, context: html, text, full: html, text
  • src/optimalLeaf/Leaf.hh - lines changed 56, context: html, text, full: html, text
  • src/optimalLeaf/SimMat.cc - lines changed 219, context: html, text, full: html, text
  • src/optimalLeaf/SimMat.hh - lines changed 33, context: html, text, full: html, text
  • src/optimalLeaf/Tree.cc - lines changed 237, context: html, text, full: html, text
  • src/optimalLeaf/Tree.hh - lines changed 38, context: html, text, full: html, text
  • src/optimalLeaf/bestArr.cc - lines changed 230, context: html, text, full: html, text
  • src/optimalLeaf/general.hh - lines changed 16, context: html, text, full: html, text
  • src/optimalLeaf/makefile - lines changed 53, context: html, text, full: html, text
  • src/optimalLeaf/optimalLeaf.h - lines changed 1, context: html, text, full: html, text
  • src/optimalLeaf/readFile.cc - lines changed 199, context: html, text, full: html, text
  • src/optimalLeaf/readFile.hh - lines changed 26, context: html, text, full: html, text

5f037d70130d40df64b477c1fef293d5876f9e32 Mon May 15 13:06:19 2017 -0700

• oops, left out the most important file for sorting!
  • src/hg/hgTracks/sortWig.c - lines changed 138, context: html, text, full: html, text

b1a99b763d15ce616e7c3d712f5d87a0de88548c Mon May 15 15:00:56 2017 -0700

• make it so userApps is not dependent on optimalLib
  • src/makefile - lines changed 5, context: html, text, full: html, text

49b315a9a902659d3d47e353fbb5fd907588b558 Tue May 16 08:57:20 2017 -0700

• make paSNP compile
  • src/hg/utils/paSNP/pa.h - lines changed 49, context: html, text, full: html, text
  • src/hg/utils/paSNP/paSNP.c - lines changed 2, context: html, text, full: html, text

dab89c1682e091dfa3780ce95359ebea9f6b7d52 Thu May 18 09:49:17 2017 -0700

• add licensing info to optimalLeaf library
  • src/optimalLeaf/Leaf.cc - lines changed 6, context: html, text, full: html, text
  • src/optimalLeaf/Leaf.hh - lines changed 6, context: html, text, full: html, text
  • src/optimalLeaf/README.txt - lines changed 4, context: html, text, full: html, text
  • src/optimalLeaf/SimMat.cc - lines changed 6, context: html, text, full: html, text
  • src/optimalLeaf/SimMat.hh - lines changed 6, context: html, text, full: html, text
  • src/optimalLeaf/Tree.cc - lines changed 6, context: html, text, full: html, text
  • src/optimalLeaf/Tree.hh - lines changed 6, context: html, text, full: html, text
  • src/optimalLeaf/bestArr.cc - lines changed 6, context: html, text, full: html, text
  • src/optimalLeaf/general.hh - lines changed 6, context: html, text, full: html, text
  • src/optimalLeaf/readFile.cc - lines changed 6, context: html, text, full: html, text
  • src/optimalLeaf/readFile.hh - lines changed 6, context: html, text, full: html, text

d9979532689e2d49aa15e6062458617878551a87 Sat May 20 18:50:32 2017 -0700

• changes in response to code review
  • src/hg/hgComposite/hgComposite.c - lines changed 4, context: html, text, full: html, text