File Changes for mspeir

v350_preview to v350_preview2 (2017-05-22 to 2017-05-29) v350

• python/lib/ucscGb/qa/tables/checkGapOverlap.py
  • lines changed 129, context: html, text, full: html, text
    d540dfe0694290a9b534284091d7a8d4af96f467 Wed May 24 09:31:52 2017 -0700
    Adding two new library files: checkGapOverlap and tableTypeUtils. checkGapOverlap contains functions needed to create a bed3 file out of a given table, check overlap of items in this bed3 with gaps both bridged and not, and output urls to the first three of these overlaps. tableTypeUtils contains functions and sets moved from factory.py and positionalQa.py as well as access functions for these sets. refs #18828
• python/lib/ucscGb/qa/tables/factory.py
  • lines changed 32, context: html, text, full: html, text
    d540dfe0694290a9b534284091d7a8d4af96f467 Wed May 24 09:31:52 2017 -0700
    Adding two new library files: checkGapOverlap and tableTypeUtils. checkGapOverlap contains functions needed to create a bed3 file out of a given table, check overlap of items in this bed3 with gaps both bridged and not, and output urls to the first three of these overlaps. tableTypeUtils contains functions and sets moved from factory.py and positionalQa.py as well as access functions for these sets. refs #18828
• python/lib/ucscGb/qa/tables/positionalQa.py
  • lines changed 41, context: html, text, full: html, text
    d540dfe0694290a9b534284091d7a8d4af96f467 Wed May 24 09:31:52 2017 -0700
    Adding two new library files: checkGapOverlap and tableTypeUtils. checkGapOverlap contains functions needed to create a bed3 file out of a given table, check overlap of items in this bed3 with gaps both bridged and not, and output urls to the first three of these overlaps. tableTypeUtils contains functions and sets moved from factory.py and positionalQa.py as well as access functions for these sets. refs #18828
• python/lib/ucscGb/qa/tables/tableTypeUtils.py
  • lines changed 89, context: html, text, full: html, text
    d540dfe0694290a9b534284091d7a8d4af96f467 Wed May 24 09:31:52 2017 -0700
    Adding two new library files: checkGapOverlap and tableTypeUtils. checkGapOverlap contains functions needed to create a bed3 file out of a given table, check overlap of items in this bed3 with gaps both bridged and not, and output urls to the first three of these overlaps. tableTypeUtils contains functions and sets moved from factory.py and positionalQa.py as well as access functions for these sets. refs #18828
• src/hg/htdocs/goldenPath/help/hgGeneGraph.html
  • lines changed 3, context: html, text, full: html, text
    326daa8d8909356a7bd10545c3525ff285cb40b1 Mon May 22 14:54:04 2017 -0700
    Correction to URL for hgGeneGraph stats page, changing URL to database that's now disappeared, minor spelling correction, refs #13634
• src/hg/makeDb/trackDb/interactions.html
  • lines changed 1, context: html, text, full: html, text
    3427fa112813f798972aeba31f388459fc9007a2 Tue May 23 15:07:04 2017 -0700
    Fixing URL typo, refs #13634
• src/utils/qa/makefile
  • lines changed 1, context: html, text, full: html, text
    00be53fdc64136b82e946142ed54230a8a092a34 Wed May 24 10:30:42 2017 -0700
    Add new runBits to makefile. Removing old version, refs #18828
• src/utils/qa/runBits
  • lines changed 51, context: html, text, full: html, text
    dfa38476ce393fb3ae03ed7ba8f6845596e26b73 Wed May 24 10:29:08 2017 -0700
    New version of runBits based on Python. Runs featureBits to check percent coverage on genome plus percent overlap with gaps. Will also output links to genome-test for first three overlapped gaps. Can also output overlap with unbridged gaps. refs #18828