Commits for mspeir
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v350_preview to v350_preview2 (2017-05-22 to 2017-05-29) v350
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326daa8d8909356a7bd10545c3525ff285cb40b1 Mon May 22 14:54:04 2017 -0700
- Correction to URL for hgGeneGraph stats page, changing URL to database that's now disappeared, minor spelling correction, refs #13634
- src/hg/htdocs/goldenPath/help/hgGeneGraph.html - lines changed 3, context: html, text, full: html, text
3427fa112813f798972aeba31f388459fc9007a2 Tue May 23 15:07:04 2017 -0700
- Fixing URL typo, refs #13634
- src/hg/makeDb/trackDb/interactions.html - lines changed 1, context: html, text, full: html, text
d540dfe0694290a9b534284091d7a8d4af96f467 Wed May 24 09:31:52 2017 -0700
- Adding two new library files: checkGapOverlap and tableTypeUtils. checkGapOverlap contains functions needed to create a bed3 file out of a given table, check overlap of items in this bed3 with gaps both bridged and not, and output urls to the first three of these overlaps. tableTypeUtils contains functions and sets moved from factory.py and positionalQa.py as well as access functions for these sets. refs #18828
- python/lib/ucscGb/qa/tables/checkGapOverlap.py - lines changed 129, context: html, text, full: html, text
- python/lib/ucscGb/qa/tables/factory.py - lines changed 32, context: html, text, full: html, text
- python/lib/ucscGb/qa/tables/positionalQa.py - lines changed 41, context: html, text, full: html, text
- python/lib/ucscGb/qa/tables/tableTypeUtils.py - lines changed 89, context: html, text, full: html, text
dfa38476ce393fb3ae03ed7ba8f6845596e26b73 Wed May 24 10:29:08 2017 -0700
- New version of runBits based on Python. Runs featureBits to check percent coverage on genome plus percent overlap with gaps. Will also output links to genome-test for first three overlapped gaps. Can also output overlap with unbridged gaps. refs #18828
00be53fdc64136b82e946142ed54230a8a092a34 Wed May 24 10:30:42 2017 -0700
- Add new runBits to makefile. Removing old version, refs #18828
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