Commits for hiram

v350_base to v351_preview (2017-06-05 to 2017-06-12) v351

af45f88e0df3c783edb5ae37fb53a0baf54bc315 Mon Jun 5 10:31:41 2017 -0700

• adding hg38 chainNet procedure refs #19511
  • src/hg/makeDb/doc/equCab2.txt - lines changed 27, context: html, text, full: html, text

fdd2ecea68d75d0a52d365473c1df7416f3e7f75 Mon Jun 5 10:58:42 2017 -0700

• fixup beta build refs #19473
  • src/hg/pyLib/makefile - lines changed 1, context: html, text, full: html, text

03df8df08572351d84eb9a23359be3706efa7ee0 Tue Jun 6 09:27:36 2017 -0700

• adding reading test for the trash Apocalypse testing no redmine
  • src/hg/utils/trashRead/makefile - lines changed 3, context: html, text, full: html, text
  • src/hg/utils/trashRead/trashRead.c - lines changed 114, context: html, text, full: html, text

ad0f19ab3b6f5d24bade3c1a4f13825351c5a518 Tue Jun 6 09:28:26 2017 -0700

• checking for error on write to detect difficulties for trash Apocalypse testing no redmine
  • src/hg/utils/trashLoad/trashLoad.c - lines changed 11, context: html, text, full: html, text

3befa37afeed7e94561d5d38cd429744ffe377f3 Tue Jun 6 09:56:58 2017 -0700

• scripts need to go out with make utils no redmine
  • src/hg/utils/makefile - lines changed 7, context: html, text, full: html, text

4e58f720cc61c696f740527a5a8282a2e4582df0 Tue Jun 6 10:31:21 2017 -0700

• correct remove targets refs #19559
  • src/hg/hgGeneGraph/makefile - lines changed 2, context: html, text, full: html, text

9a1d30729ffcacd5d9ca974e684c14577d357b3b Wed Jun 7 10:30:11 2017 -0700

• fixup assembly FTP links to NCBI refs #13553
  • src/hg/makeDb/doc/mouseStrains/GCA_001624185.1_129S1_SvImJ_v1/html/GCA_001624185.1_129S1_SvImJ_v1.description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624215.1_A_J_v1/html/GCA_001624215.1_A_J_v1.description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624295.1_AKR_J_v1/html/GCA_001624295.1_AKR_J_v1.description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624445.1_CAST_EiJ_v1/html/GCA_001624445.1_CAST_EiJ_v1.description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624475.1_CBA_J_v1/html/GCA_001624475.1_CBA_J_v1.description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624505.1_DBA_2J_v1/html/GCA_001624505.1_DBA_2J_v1.description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624535.1_FVB_NJ_v1/html/GCA_001624535.1_FVB_NJ_v1.description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624675.1_NOD_ShiLtJ_v1/html/GCA_001624675.1_NOD_ShiLtJ_v1.description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624745.1_NZO_HlLtJ_v1/html/GCA_001624745.1_NZO_HlLtJ_v1.description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624775.1_PWK_PhJ_v1/html/GCA_001624775.1_PWK_PhJ_v1.description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624835.1_WSB_EiJ_v1/html/GCA_001624835.1_WSB_EiJ_v1.description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624865.1_SPRET_EiJ_v1/html/GCA_001624865.1_SPRET_EiJ_v1.description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001632525.1_BALB_cJ_v1/html/GCA_001632525.1_BALB_cJ_v1.description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001632555.1_C57BL_6NJ_v1/html/GCA_001632555.1_C57BL_6NJ_v1.description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001632575.1_C3H_HeJ_v1/html/GCA_001632575.1_C3H_HeJ_v1.description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001632615.1_LP_J_v1/html/GCA_001632615.1_LP_J_v1.description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.description.html - lines changed 1, context: html, text, full: html, text

c81023ffa6402ccb7542f1250d0fc608961bdea4 Thu Jun 8 09:56:36 2017 -0700

• fixup gene count and bases covered measurements refs #13553
  • src/hg/makeDb/doc/mouseStrains/GCA_001624185.1_129S1_SvImJ_v1/html/GCA_001624185.1_129S1_SvImJ_v1.augustus.html - lines changed 1, context: html, text, full: html, text

db2e8920760e7c9741262b9e6b29a214e0390d80 Thu Jun 8 10:25:33 2017 -0700

• photo courtesy Malin P. Tygesen and Jacob B. Hansen, Univ. Copenhagen, Denmark - http://www1.bio.ku.dk/cbp/metabolic_regulation_lab/ refs #19237
  • src/hg/htdocs/images/oviAri3.jpg - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)

efaa02d2b04c51116754098efa34fc0eae69a69b Thu Jun 8 10:38:08 2017 -0700

• correctly crop out white space at the bottom refs #19237
  • src/hg/htdocs/images/oviAri3.jpg - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)

c25b0a10b47fd3798f39dfffb36d5d428503439a Thu Jun 8 10:40:14 2017 -0700

• updated photograph from Malin P. Tygesen and Jacob B. Hansen refs #19237
  • src/hg/makeDb/trackDb/sheep/oviAri3/description.html - lines changed 4, context: html, text, full: html, text

225d6b42de62aa8a50848b8ddbabe281369c2832 Mon Jun 12 10:06:29 2017 -0700

• v351 preview1 refs #19473
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text