File Changes for kent

v351_base to v352_preview (2017-06-26 to 2017-07-03) v352

• src/hca/toHca/hcaStormToBundles/hcaStormToBundles.c
  • lines changed 118, context: html, text, full: html, text
    fb45fbf345b9709180b22cff4dd91749676ad147 Thu Jun 29 06:08:42 2017 -0700
    Adding schema parameter and no longer quoting numerical values in json output.
  • lines changed 26, context: html, text, full: html, text
    f8cd0641b9d1f22bbbb5661bfe885a446e9da098 Thu Jun 29 07:06:44 2017 -0700
    Handling arrays in schema.
• src/hca/toHca/hcaStormToBundles/test.schema
  • lines changed 50, context: html, text, full: html, text
    fb45fbf345b9709180b22cff4dd91749676ad147 Thu Jun 29 06:08:42 2017 -0700
    Adding schema parameter and no longer quoting numerical values in json output.
  • lines changed 4, context: html, text, full: html, text
    f8cd0641b9d1f22bbbb5661bfe885a446e9da098 Thu Jun 29 07:06:44 2017 -0700
    Handling arrays in schema.
• src/hca/toHca/hcaStormToBundles/testIt
  • lines changed 1, context: html, text, full: html, text
    fb45fbf345b9709180b22cff4dd91749676ad147 Thu Jun 29 06:08:42 2017 -0700
    Adding schema parameter and no longer quoting numerical values in json output.
• src/inc/jsonWrite.h
  • lines changed 2, context: html, text, full: html, text
    ffc338d50d807987ff5a22ccfdd8a59f660e70d2 Sun Jul 2 08:51:10 2017 -0700
    Making JW_SEP not a define any more but a field of he jsonWrite structure.
• src/inc/tagSchema.h
  • lines changed 26, context: html, text, full: html, text
    da1eb5d7f3bee2a9e2cefea7e57a304de7a5fa26 Wed Jun 28 10:14:11 2017 -0700
    Factoring out a useful structure and routine into a new tagSchema module.
  • lines changed 1, context: html, text, full: html, text
    9a81d879da51d0973a072b97734a279eb6e8a8c6 Wed Jun 28 21:25:51 2017 -0700
    Adding isArray flag.
  • lines changed 2, context: html, text, full: html, text
    0ce3985de8c625fbaf819bd6d1de498a0d03d116 Sun Jul 2 08:51:51 2017 -0700
    Adding routine to put schema into a hash.
• src/inc/tagToJson.h
  • lines changed 27, context: html, text, full: html, text
    f1b52b0e0812f32e9eeb6c00c176aea94b6ebfaf Sun Jul 2 08:53:16 2017 -0700
    Moving a routine that helps turn tagStorm into json into a shared library.
• src/lib/jsonWrite.c
  • lines changed 14, context: html, text, full: html, text
    ffc338d50d807987ff5a22ccfdd8a59f660e70d2 Sun Jul 2 08:51:10 2017 -0700
    Making JW_SEP not a define any more but a field of he jsonWrite structure.
• src/lib/makefile
  • lines changed 1, context: html, text, full: html, text
    da1eb5d7f3bee2a9e2cefea7e57a304de7a5fa26 Wed Jun 28 10:14:11 2017 -0700
    Factoring out a useful structure and routine into a new tagSchema module.
  • lines changed 1, context: html, text, full: html, text
    f1b52b0e0812f32e9eeb6c00c176aea94b6ebfaf Sun Jul 2 08:53:16 2017 -0700
    Moving a routine that helps turn tagStorm into json into a shared library.
• src/lib/tagSchema.c
  • lines changed 84, context: html, text, full: html, text
    da1eb5d7f3bee2a9e2cefea7e57a304de7a5fa26 Wed Jun 28 10:14:11 2017 -0700
    Factoring out a useful structure and routine into a new tagSchema module.
  • lines changed 9, context: html, text, full: html, text
    9a81d879da51d0973a072b97734a279eb6e8a8c6 Wed Jun 28 21:25:51 2017 -0700
    Adding isArray flag.
  • lines changed 10, context: html, text, full: html, text
    0ce3985de8c625fbaf819bd6d1de498a0d03d116 Sun Jul 2 08:51:51 2017 -0700
    Adding routine to put schema into a hash.
• src/lib/tagToJson.c
  • lines changed 73, context: html, text, full: html, text
    f1b52b0e0812f32e9eeb6c00c176aea94b6ebfaf Sun Jul 2 08:53:16 2017 -0700
    Moving a routine that helps turn tagStorm into json into a shared library.
• src/tagStorm/tagSchemaToJson/description.txt
  • lines changed 3, context: html, text, full: html, text
    0ab99a411f8853458cd76edc22d91c807542e3da Sun Jul 2 09:13:59 2017 -0700
    Utility to make a jsonSchema out of a tagStorm schema. Perhaps it is a bit hca-specific.
• src/tagStorm/tagSchemaToJson/makefile
  • lines changed 3, context: html, text, full: html, text
    0ab99a411f8853458cd76edc22d91c807542e3da Sun Jul 2 09:13:59 2017 -0700
    Utility to make a jsonSchema out of a tagStorm schema. Perhaps it is a bit hca-specific.
• src/tagStorm/tagSchemaToJson/oneFile.schema
  • lines changed 17, context: html, text, full: html, text
    59106647254a927a3824b49fc84c8e679db81532 Sun Jul 2 11:48:51 2017 -0700
    Adding -oneFile option.
• src/tagStorm/tagSchemaToJson/tagSchemaToJson.c
  • lines changed 125, context: html, text, full: html, text
    610a23db241aabe7681a0f93d50afc9cc4073994 Wed Jun 28 11:48:21 2017 -0700
    First cut of convert from tagStorm schema to JSON schema.
  • lines changed 25, context: html, text, full: html, text
    194ac34777bf7080d053ff16e26782b2b389cd83 Wed Jun 28 12:01:24 2017 -0700
    Adding in required array.
  • lines changed 115, context: html, text, full: html, text
    8e6dcbb1f7e059a2c105ebd9f880f2f89e2c7f15 Wed Jun 28 13:55:22 2017 -0700
    Allowing patternProperties (where wildcards in the tag name). Making a separate file that can contain descriptions.
  • lines changed 152, context: html, text, full: html, text
    a79a8c54828f0c8d1c9173089d1bde771f404dd1 Wed Jun 28 16:53:55 2017 -0700
    Making it deal with subobjects.
  • lines changed 38, context: html, text, full: html, text
    9200e392e5e41be010d1d41776acd7291c7f7754 Wed Jun 28 21:26:41 2017 -0700
    Writing out enums rather than patterns when possible. Supporting simple arrays.
  • lines changed 23, context: html, text, full: html, text
    59106647254a927a3824b49fc84c8e679db81532 Sun Jul 2 11:48:51 2017 -0700
    Adding -oneFile option.
• src/tagStorm/tagSchemaToJson/test.schema
  • lines changed 109, context: html, text, full: html, text
    0ab99a411f8853458cd76edc22d91c807542e3da Sun Jul 2 09:13:59 2017 -0700
    Utility to make a jsonSchema out of a tagStorm schema. Perhaps it is a bit hca-specific.
• src/tagStorm/tagStormCheck/tagStormCheck.c
  • lines changed 88, context: html, text, full: html, text
    da1eb5d7f3bee2a9e2cefea7e57a304de7a5fa26 Wed Jun 28 10:14:11 2017 -0700
    Factoring out a useful structure and routine into a new tagSchema module.
• src/utils/fastqStatsAndSubsample/fastqStatsAndSubsample.c
  • lines changed 1, context: html, text, full: html, text
    944d721b951ffdb71e8ce7caf7215ee83fbb1045 Wed Jun 28 01:35:47 2017 -0700
    Removing statement about no input pipe limitation from usage message as it got fixed.