All File Changes

v356_preview to v356_preview2 (2017-09-25 to 2017-10-02) v356

• src/hg/cirm/gateway/htdocs/cescgOrg.html
  • lines changed 649, context: html, text, full: html, text
    b5db5c139f2dd0fcbe8012f176004e790ac24901 Tue Sep 26 10:30:11 2017 -0700
    First pass at adding CIP and CRP info to CESCG organization page. Info primarily imported from Salk/Stanford CESCG site, no redmine
• src/hg/cirm/gateway/htdocs/cescgPeople.html
  • lines changed 446, context: html, text, full: html, text
    88cb0d572d3a155ac267ed7c2fdace8009f549e1 Tue Sep 26 10:21:03 2017 -0700
    Initial commit of People/Labs page and publications page, refs #19868 #19791
• src/hg/cirm/gateway/htdocs/cescgPubs.html
  • lines changed 259, context: html, text, full: html, text
    88cb0d572d3a155ac267ed7c2fdace8009f549e1 Tue Sep 26 10:21:03 2017 -0700
    Initial commit of People/Labs page and publications page, refs #19868 #19791
• src/hg/cirm/gateway/htdocs/header.html
  • lines changed 11, context: html, text, full: html, text
    ec4f751ff98d86ea203c6f8c58408ac88575789e Tue Sep 26 10:26:29 2017 -0700
    Minor formatting changes to header file, no redmine
• src/hg/cirm/gateway/htdocs/projects.html
  • lines changed 421, context: html, text, full: html, text
    4c135e6ee643700fbd45e37285c744386e1bb201 Tue Sep 26 10:28:19 2017 -0700
    Adding lab descriptions to PI tooltips; adding dataset descriptions from cdwWebBrowse dataset page, no redmine
• src/hg/cirm/gateway/htdocs/style/cirmStyle.css
  • lines changed 21, context: html, text, full: html, text
    b3466f9659117d3ca998bf24aca8160e9d588f44 Tue Sep 26 10:31:57 2017 -0700
    Some minor formatting tweaks. Adjusted padding for page title text class and added new class for right-aligning images, no redmine
• src/hg/hgCollection/hgCollection.c
  • lines changed 1, context: html, text, full: html, text
    f72f493cde054def4770a6726c6231f0a7f7b406 Mon Sep 25 13:52:49 2017 -0700
    don't put multiWig options (overlay,stacked) on collections
  • lines changed 135, context: html, text, full: html, text
    bf229bca8bf92e11feb9aa64a52a90974fc2f375 Wed Sep 27 12:09:42 2017 -0700
    clean up C code, add support for supertracks in Available Tracks
• src/hg/hgTracks/gtexEqtlClusterTrack.c
  • lines changed 34, context: html, text, full: html, text
    68d7b2a05006852f9c3b3d0e2b2950bd9e28856e Tue Sep 26 09:25:29 2017 -0700
    Change effect size color conventions, input from JK. refs #15646
  • lines changed 8, context: html, text, full: html, text
    5906e77a265fe9100d798f0f3e31668a3a4704e3 Wed Sep 27 10:50:25 2017 -0700
    Remove experimental code. refs #15646
• src/hg/hgTracks/simpleTracks.c
  • lines changed 2, context: html, text, full: html, text
    ef484155c4c8234170e5add16fc391338d23971b Thu Sep 28 16:10:56 2017 -0700
    Add GTEx tissue label color black for BED format as well as bigBed (for possible use in V1). And test .ra file. refs #20236
• src/hg/htdocs/FAQ/FAQformat.html
  • lines changed 2, context: html, text, full: html, text
    75e705b28c1a6e79231b0902b4065125dcb31a56 Fri Sep 29 09:21:34 2017 -0700
    tiny small change to PSL format docs
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 21, context: html, text, full: html, text
    1160f878b279184a2d2141328ec589c2aa636a8a Tue Sep 26 17:22:39 2017 -0700
    adding announcement of dbSNP video
  • lines changed 21, context: html, text, full: html, text
    0ff01530e9a91eca82393c4cdf9a600f88f0b5b4 Fri Sep 29 09:32:26 2017 -0700
    Adding a news item about HGVS output from VAI refs #19968
• src/hg/htdocs/goldenPath/pubs.html
  • lines changed 10, context: html, text, full: html, text
    b10d0b69705cd25a4898a9a004aabad0fb2ea4c1 Tue Sep 26 14:00:00 2017 -0700
    added Toil paper
  • lines changed 3, context: html, text, full: html, text
    458704120287178524f19ab24bff594a3229456a Tue Sep 26 15:42:21 2017 -0700
    adding all authors
  • lines changed 1, context: html, text, full: html, text
    921ccd94a7220e7b50f85a2c55ec866a3240700e Tue Sep 26 15:44:50 2017 -0700
    removing et al
  • lines changed 11, context: html, text, full: html, text
    678438a7c104ab61d570109c3493bd72c08a9a1f Wed Sep 27 09:42:57 2017 -0700
    expanding author list
• src/hg/htdocs/images/training/vidTitle12.jpg
  • lines changed 0, context: html, text, full: html, text
    6dade533662aa00c0feaab95ee5e7bc3639d560a Tue Sep 19 15:32:40 2017 -0700
    image for video page. vid12
• src/hg/htdocs/inc/hgCollection.html
  • lines changed 1, context: html, text, full: html, text
    bf229bca8bf92e11feb9aa64a52a90974fc2f375 Wed Sep 27 12:09:42 2017 -0700
    clean up C code, add support for supertracks in Available Tracks
• src/hg/htdocs/indexNews.html
  • lines changed 12, context: html, text, full: html, text
    1160f878b279184a2d2141328ec589c2aa636a8a Tue Sep 26 17:22:39 2017 -0700
    adding announcement of dbSNP video
  • lines changed 5, context: html, text, full: html, text
    0ff01530e9a91eca82393c4cdf9a600f88f0b5b4 Fri Sep 29 09:32:26 2017 -0700
    Adding a news item about HGVS output from VAI refs #19968
• src/hg/htdocs/training/index.html
  • lines changed 27, context: html, text, full: html, text
    ee0110f4882e01e79fd28209263e776badeee547 Mon Sep 25 13:56:01 2017 -0700
    adding Prague, Slovenia workshops
• src/hg/inc/hgFind.h
  • lines changed 1, context: html, text, full: html, text
    6b045fb4555e28c738cab4be57b8a3750584fe9b Fri Sep 29 17:14:01 2017 -0700
    Don't inject highlight straight into cart when hgFind finds a match for a search with padding -- only set highlight when there's a single match or when the user clicks on a link to select a specific match. fixes #20245
• src/hg/js/hgCollection.js
  • lines changed 45, context: html, text, full: html, text
    569b08ba96fa847fbb1a96e5f8b0fb491f877117 Thu Sep 28 13:36:21 2017 -0700
    add dirty flag and a right-click menu on the available tracks pane
• src/hg/lib/annoStreamDb.c
  • lines changed 1, context: html, text, full: html, text
    f3a1cdac3f547b8d41c3208a43befa36d762c1ce Thu Sep 28 12:49:00 2017 -0700
    Oops, wasn't caching autoSql objects with the correct key so they weren't found, just looked up over and over.
• src/hg/lib/gtexEqtl.as
  • lines changed 1, context: html, text, full: html, text
    8e631f4b4257d705fba6bc09c88ded580d57aabd Wed Sep 27 10:43:48 2017 -0700
    Add SQL to load GTEx eQTL tissue tracks. refs #15646
  • lines changed 5, context: html, text, full: html, text
    5081c6ba7927845f36298eeef0b87c8e6ed8cfb8 Wed Sep 27 16:32:39 2017 -0700
    Polish table and field descriptions. refs #15646
  • lines changed 3, context: html, text, full: html, text
    524e5cc6f3b58992e985c6f8b3ab2837460ec96c Fri Sep 29 16:58:55 2017 -0700
    Update schema so variant and gene are displayed. refs #20236
• src/hg/lib/gtexEqtl.sql
  • lines changed 27, context: html, text, full: html, text
    8e631f4b4257d705fba6bc09c88ded580d57aabd Wed Sep 27 10:43:48 2017 -0700
    Add SQL to load GTEx eQTL tissue tracks. refs #15646
  • lines changed 1, context: html, text, full: html, text
    9c7801effa46ec46768d20d915cf9013e514363a Fri Sep 29 14:40:45 2017 -0700
    More information in schema field descriptions, requested by QA. refs #15646
  • lines changed 9, context: html, text, full: html, text
    524e5cc6f3b58992e985c6f8b3ab2837460ec96c Fri Sep 29 16:58:55 2017 -0700
    Update schema so variant and gene are displayed. refs #20236
• src/hg/lib/hgFind.c
  • lines changed 30, context: html, text, full: html, text
    6b045fb4555e28c738cab4be57b8a3750584fe9b Fri Sep 29 17:14:01 2017 -0700
    Don't inject highlight straight into cart when hgFind finds a match for a search with padding -- only set highlight when there's a single match or when the user clicks on a link to select a specific match. fixes #20245
• src/hg/makeDb/doc/aotNan1/initialBuild.txt
  • lines changed 184, context: html, text, full: html, text
    8d35c4227fb1920dd8b1765db3bab3d3d95622c8 Mon Sep 25 11:18:47 2017 -0700
    starting genbank run refs #20196
  • lines changed 49, context: html, text, full: html, text
    95185a22d3de451abfaa45a10cd03cf997f4f19c Thu Sep 28 10:55:15 2017 -0700
    ready for joinerCheck business refs #20196
  • lines changed 14, context: html, text, full: html, text
    ca70de684794c992e9859ccefe8ff45d41757b2d Thu Sep 28 13:01:38 2017 -0700
    completed and in pushQ refs #20196
• src/hg/makeDb/doc/cebCap1/initialBuild.txt
  • lines changed 694, context: html, text, full: html, text
    3c2a38ff7b34c9744f8c422719f4286f4238faa7 Wed Sep 27 17:11:55 2017 -0700
    running up repeatMasker refs #20237
• src/hg/makeDb/doc/cerAty1/initialBuild.txt
  • lines changed 51, context: html, text, full: html, text
    06e948d48841886e21bfabad9e06dd2ef73fb5d6 Fri Sep 29 14:27:10 2017 -0700
    completed and in the pushQ refs #20199
• src/hg/makeDb/doc/hg38/lastzRuns.txt
  • lines changed 279, context: html, text, full: html, text
    8c1c98849a35b8137b613298ee826026b074e988 Thu Sep 28 13:54:29 2017 -0700
    lastz runs for aotNan1 cerAty1 manLeu1 and neoSch1 refs #20196 #20199 #20190 #19883
• src/hg/makeDb/doc/hg38/ncbiRefSeq.txt
  • lines changed 4, context: html, text, full: html, text
    feb29c6e9dc36eb2ef9d150b35243e3987feb7a4 Thu Sep 28 11:58:01 2017 -0700
    ncbiRefSeqLink should contain only the items in ncbiRefSeq, not ncbiRefSeqOther. Re-ran doNcbiRefSeq.pl on hg38 and mm10. refs #18997
• src/hg/makeDb/doc/manLeu1/initialBuild.txt
  • lines changed 134, context: html, text, full: html, text
    6752359ad20cca58f4f3745186716d5a2c70d549 Tue Sep 26 11:13:41 2017 -0700
    QA ready, done refs #20190
• src/hg/makeDb/doc/mm10.txt
  • lines changed 6, context: html, text, full: html, text
    feb29c6e9dc36eb2ef9d150b35243e3987feb7a4 Thu Sep 28 11:58:01 2017 -0700
    ncbiRefSeqLink should contain only the items in ncbiRefSeq, not ncbiRefSeqOther. Re-ran doNcbiRefSeq.pl on hg38 and mm10. refs #18997
  • lines changed 228, context: html, text, full: html, text
    210d1d9c7d0721e0034191a1739aef974b871689 Thu Sep 28 13:08:26 2017 -0700
    lastz chain net to manLeu1 aotNan1 neoSch1 cerAty1 refs #20196 #20199 #19883 #20190
  • lines changed 114, context: html, text, full: html, text
    c24669d5a126dd32e0b13a2f4de74208cea9957f Thu Sep 28 17:42:49 2017 -0700
    starting proCoq1 and cerCap1 lastz runs refs #20235 #20237
• src/hg/makeDb/doc/neoSch1/initialBuild.txt
  • lines changed 112, context: html, text, full: html, text
    414f4e39ab63c60f31bb1a72fef71f3e04c08938 Mon Sep 25 10:32:52 2017 -0700
    starting genbank run refs #19883
• src/hg/makeDb/doc/proCoq1/initialBuild.txt
  • lines changed 715, context: html, text, full: html, text
    f95bb6ab09881baf877b9a931514cb27a8a77401 Wed Sep 27 17:12:37 2017 -0700
    running up repeatMasker refs #20235
• src/hg/makeDb/genbank/etc/align.dbs
  • lines changed 1, context: html, text, full: html, text
    f91052636c9c8138b5fb5294bf047587a4a80225 Mon Sep 25 13:27:14 2017 -0700
    Added neoSch1 - Hawaiian monk seal - Neomonachus schauinslandi refs #19883
  • lines changed 1, context: html, text, full: html, text
    ce6ba59953295ed47a5bc4fc64804b3b880367ae Wed Sep 27 08:30:37 2017 -0700
    Added cerAty1/Sooty mangabey; refs #20199
  • lines changed 1, context: html, text, full: html, text
    d5e6ed5eca12c09f8e4676f8c8c3331086a509ba Thu Sep 28 08:28:39 2017 -0700
    Added aotNan1 - Ma's night monkey - Aotus nancymaae refs #20196
  • lines changed 1, context: html, text, full: html, text
    2a685a33c9c3d58a9ae18f770d7548ce629b121b Thu Sep 28 17:10:20 2017 -0700
    Added proCoq1 - Coquerel's sifaka/Propithecus coquereli refs #20235
  • lines changed 1, context: html, text, full: html, text
    e0895be665ac16215e2272e354745eecd6d50e1e Thu Sep 28 17:29:36 2017 -0700
    Added cebCap1 - White-faced sapajou/Cebus capucinus imitator refs #20237
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 21, context: html, text, full: html, text
    f40c1fc25c5d19a45f4cbefa40d8b85607de84cd Mon Sep 25 10:30:07 2017 -0700
    Added neoSch1 Hawaiian monk seal/Neomonachus schauinslandi; refs #19883
  • lines changed 20, context: html, text, full: html, text
    2fc5d119c0abc92076ce63c71590940128fbcb81 Mon Sep 25 11:16:38 2017 -0700
    Added aotNan1 - Ma's night monkey - Aotus nancymaae refs #20196
  • lines changed 20, context: html, text, full: html, text
    15379a1b22b23bc5101be9e4f2c93ec24b149b5b Thu Sep 28 13:46:53 2017 -0700
    Added proCoq1/Coquerel's sifaka; refs #20235
  • lines changed 20, context: html, text, full: html, text
    c6d142cf98dce855c2664ac9a4588b34cbdbe8f8 Thu Sep 28 16:03:34 2017 -0700
    Added cebCap1/Cebus capucinus; refs #20237
• src/hg/makeDb/genbank/etc/hgwdev.dbs
  • lines changed 1, context: html, text, full: html, text
    f91052636c9c8138b5fb5294bf047587a4a80225 Mon Sep 25 13:27:14 2017 -0700
    Added neoSch1 - Hawaiian monk seal - Neomonachus schauinslandi refs #19883
  • lines changed 1, context: html, text, full: html, text
    ce6ba59953295ed47a5bc4fc64804b3b880367ae Wed Sep 27 08:30:37 2017 -0700
    Added cerAty1/Sooty mangabey; refs #20199
  • lines changed 1, context: html, text, full: html, text
    d5e6ed5eca12c09f8e4676f8c8c3331086a509ba Thu Sep 28 08:28:39 2017 -0700
    Added aotNan1 - Ma's night monkey - Aotus nancymaae refs #20196
  • lines changed 1, context: html, text, full: html, text
    2a685a33c9c3d58a9ae18f770d7548ce629b121b Thu Sep 28 17:10:20 2017 -0700
    Added proCoq1 - Coquerel's sifaka/Propithecus coquereli refs #20235
  • lines changed 1, context: html, text, full: html, text
    e0895be665ac16215e2272e354745eecd6d50e1e Thu Sep 28 17:29:36 2017 -0700
    Added cebCap1 - White-faced sapajou/Cebus capucinus imitator refs #20237
• src/hg/makeDb/genbank/etc/ignore.idx
  • lines changed 2, context: html, text, full: html, text
    433db4e0f00536fe4369f67176031fef29651d44 Sat Sep 23 09:42:51 2017 -0700
    ignore more genbank stuff
• src/hg/makeDb/genbank/src/ccds/createKeys.sql
  • lines changed 1, context: html, text, full: html, text
    28bd7b07be10d02f2304ca712c0980e2aab717b3 Mon Sep 25 15:09:27 2017 -0700
    CCDS changed their database format again
• src/hg/makeDb/genbank/src/ccds/createTables.sql
  • lines changed 3, context: html, text, full: html, text
    28bd7b07be10d02f2304ca712c0980e2aab717b3 Mon Sep 25 15:09:27 2017 -0700
    CCDS changed their database format again
• src/hg/makeDb/genbank/src/ccds/ncbiSql/createKeys.sql
  • lines changed 6, context: html, text, full: html, text
    28bd7b07be10d02f2304ca712c0980e2aab717b3 Mon Sep 25 15:09:27 2017 -0700
    CCDS changed their database format again
• src/hg/makeDb/genbank/src/ccds/ncbiSql/createTables.sql
  • lines changed 3, context: html, text, full: html, text
    28bd7b07be10d02f2304ca712c0980e2aab717b3 Mon Sep 25 15:09:27 2017 -0700
    CCDS changed their database format again
• src/hg/makeDb/genbank/src/lib/gbGenome.c
  • lines changed 2, context: html, text, full: html, text
    f40c1fc25c5d19a45f4cbefa40d8b85607de84cd Mon Sep 25 10:30:07 2017 -0700
    Added neoSch1 Hawaiian monk seal/Neomonachus schauinslandi; refs #19883
  • lines changed 2, context: html, text, full: html, text
    2fc5d119c0abc92076ce63c71590940128fbcb81 Mon Sep 25 11:16:38 2017 -0700
    Added aotNan1 - Ma's night monkey - Aotus nancymaae refs #20196
  • lines changed 2, context: html, text, full: html, text
    15379a1b22b23bc5101be9e4f2c93ec24b149b5b Thu Sep 28 13:46:53 2017 -0700
    Added proCoq1/Coquerel's sifaka; refs #20235
  • lines changed 2, context: html, text, full: html, text
    c6d142cf98dce855c2664ac9a4588b34cbdbe8f8 Thu Sep 28 16:03:34 2017 -0700
    Added cebCap1/Cebus capucinus; refs #20237
• src/hg/makeDb/schema/all.joiner
  • lines changed 12, context: html, text, full: html, text
    dbb7e29cb7a8d6ef024c6e0572a4ff8f22030756 Tue Sep 26 08:42:21 2017 -0700
    Added manLeu1 - Drill/Mandrillus leucophaeus refs #20190
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    5183c67a0b661e16038bcb6a5e79c65efd1ab224 Thu Sep 28 10:59:53 2017 -0700
    adding rules for aotNan1 refs #20196
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    82a6639181e079acef1cc1c12ea309bb14a2daad Thu Sep 28 11:25:58 2017 -0700
    Fine-tuning rules for ncbiRefSeq tables.
  • lines changed 10, context: html, text, full: html, text
    a125ca30634b3ace6e690af42319c69e6b081a71 Fri Sep 29 10:17:48 2017 -0700
    adding rules for cerAty1 refs #20199
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    ef23a96b24b6898b3fafb1f2d7d7796276bdaf5a Fri Sep 29 15:45:38 2017 -0700
    Adding gtexEqtlCluster to hg19 tablesIgnored, refs #15646
• src/hg/makeDb/trackDb/ccdsGene.html
  • lines changed 6, context: html, text, full: html, text
    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/chimp/panTro2/trackDb.8way.ra
  • lines changed 85, context: html, text, full: html, text
    cc36042c205250ee009b491e4a33ce866063899c Mon Sep 25 13:54:08 2017 -0700
    panTro2: Repairing conservation tracks, refs #17373
• src/hg/makeDb/trackDb/chimp/panTro2/trackDb.ra
  • lines changed 40, context: html, text, full: html, text
    cc36042c205250ee009b491e4a33ce866063899c Mon Sep 25 13:54:08 2017 -0700
    panTro2: Repairing conservation tracks, refs #17373
• src/hg/makeDb/trackDb/dog/canFam1/trackDb.3way.ra
  • lines changed 86, context: html, text, full: html, text
    efca100d3b12304f2cee3e7b46419494a6836784 Tue Sep 26 12:11:14 2017 -0700
    canFam1: Repairing conservation tracks, refs #17373
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    59da4d026361436559ac392c15ab8c2cd38b7611 Wed Sep 27 11:37:37 2017 -0700
    canFam1: Adding correct desc page for Conservation track, refs #17373
• src/hg/makeDb/trackDb/dog/canFam1/trackDb.ra
  • lines changed 15, context: html, text, full: html, text
    efca100d3b12304f2cee3e7b46419494a6836784 Tue Sep 26 12:11:14 2017 -0700
    canFam1: Repairing conservation tracks, refs #17373
• src/hg/makeDb/trackDb/drosophila/dm6/trackDb.ra
  • lines changed 3, context: html, text, full: html, text
    2122088264f08681d39dc30619640b576a2b6503 Thu Sep 28 14:32:24 2017 -0700
    Adding overrides for spMut uniprot variants track to get rid of table browser missing group error, refs #20174
• src/hg/makeDb/trackDb/fishClones.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/genomicSuperDups.html
  • lines changed 1, context: html, text, full: html, text
    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/affyGnf1h.html
  • lines changed 2, context: html, text, full: html, text
    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/affyU133.html
  • lines changed 2, context: html, text, full: html, text
    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/affyU95.html
  • lines changed 2, context: html, text, full: html, text
    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/clinvar.html
  • lines changed 2, context: html, text, full: html, text
    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/coriellDelDup.html
  • lines changed 1, context: html, text, full: html, text
    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/cosmicRegions.html
  • lines changed 2, context: html, text, full: html, text
    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/cytoBand.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/dgvPlus.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/est.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/gnfAtlas2.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/gtexGeneExpr.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/gtexTranscExpr.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/gwasCatalog.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/hg16/trackDb.5way.ra
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    89867184bd00f3321bd18b438e42a3913df09d94 Wed Sep 27 12:14:55 2017 -0700
    hg16: Adding correct desc page for Conservation track, refs #17373
• src/hg/makeDb/trackDb/human/hg19/gtexEqtl.html
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    72c249a6e6d19fe3f0f7bcd5c2d19b4441e697e8 Wed Sep 27 16:23:19 2017 -0700
    HTML for both GTEx eQTL tracks. refs #15646
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    99330821829fe532d1d4d9c60c548e3464b433fe Wed Sep 27 16:27:52 2017 -0700
    Minor edit. refs #15646
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    babaac53d7485bfbd45c27cc6b594dce8a783ddf Fri Sep 29 11:36:01 2017 -0700
    Adding urls to cluster and 44subtracks track settings, refs #15646
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    29b68e4c8667645b0918d8fa7cf864f0e7c2217e Fri Sep 29 13:20:11 2017 -0700
    Add Methods section, and also some clarifications requested by Jim. refs #15646
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    8a1b2f801dab35fc904034da70d9534152326565 Fri Sep 29 14:22:07 2017 -0700
    Fix typo. refs #15646
• src/hg/makeDb/trackDb/human/hg19/gtexEqtl.ra
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    72c249a6e6d19fe3f0f7bcd5c2d19b4441e697e8 Wed Sep 27 16:23:19 2017 -0700
    HTML for both GTEx eQTL tracks. refs #15646
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    e72fc200ef59f67404b8ad95980d94207de60e13 Wed Sep 27 16:30:59 2017 -0700
    Add HTML for GTEx eQTL tracks. refs #15646
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    6c7a3ed628352fb83512e4f1f064a9806662cb8a Thu Sep 28 17:09:52 2017 -0700
    Staging GTEx eQTL tracks on beta, refs #15646
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    04476f625c1f2e9c397e79e54653995477dc21fa Fri Sep 29 10:52:08 2017 -0700
    Add search on rsId. refs #15646
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    7da4a1c637c5af10fb6d3097ea3edeb55901c850 Fri Sep 29 11:12:15 2017 -0700
    Add dataVersion setting, input from QA. refs #15646
• src/hg/makeDb/trackDb/human/hg19/gtexEqtlCluster.html
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    72c249a6e6d19fe3f0f7bcd5c2d19b4441e697e8 Wed Sep 27 16:23:19 2017 -0700
    HTML for both GTEx eQTL tracks. refs #15646
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
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    72c249a6e6d19fe3f0f7bcd5c2d19b4441e697e8 Wed Sep 27 16:23:19 2017 -0700
    HTML for both GTEx eQTL tracks. refs #15646
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    ef484155c4c8234170e5add16fc391338d23971b Thu Sep 28 16:10:56 2017 -0700
    Add GTEx tissue label color black for BED format as well as bigBed (for possible use in V1). And test .ra file. refs #20236
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    6c7a3ed628352fb83512e4f1f064a9806662cb8a Thu Sep 28 17:09:52 2017 -0700
    Staging GTEx eQTL tracks on beta, refs #15646
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    311c9c8cb7c8415f000866375e9448a7d150065b Fri Sep 29 10:58:03 2017 -0700
    Keep search on alpha. refs #15646
• src/hg/makeDb/trackDb/human/hg38/Bismap.html
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    6e13f1dbf9091cffd26fd9a040bf94f48379ca1a Fri Sep 29 09:16:44 2017 -0700
    Removing mention of the 122-mer tracks on the Bismap and Umap track description pages. Removing which assemblies this track is available for - only on hg38 as a native track. refs #19154
• src/hg/makeDb/trackDb/human/hg38/Umap.html
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    6e13f1dbf9091cffd26fd9a040bf94f48379ca1a Fri Sep 29 09:16:44 2017 -0700
    Removing mention of the 122-mer tracks on the Bismap and Umap track description pages. Removing which assemblies this track is available for - only on hg38 as a native track. refs #19154
• src/hg/makeDb/trackDb/human/hg38/cons100way.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/hg38/cons20way.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/hg38/cons7way.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/hg38/crispr.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/hg38/gold.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/hg38/gwipsvizRiboseq.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/hg38/knownGene.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/hg38/lincRNAs.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/hg38/nonCodingRNAs.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/hg38/omimGene2.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/hg38/omimLocation.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/hg38/ucscRetroAli9.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeSuper.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/hg38/wgEncodeReg.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/hg38/wgEncodeRegDnase.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/hg38/wgEncodeRegDnaseSignal.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/hgIkmc.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/iscaComposite.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/lrg.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/lrgTranscriptAli.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/omimAvSnp.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
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    Fixing broken links found by the broken link report for hg38, no Redmine
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    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/snp144.shared.html
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    Fixing broken links found by the broken link report for hg38, no Redmine
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/snp150.shared.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/snpedia.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/stsMap.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/human/trackDb.ra
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    3dc0906e460fabc43173504159b9b40c0b95c523 Tue Sep 26 15:10:51 2017 -0700
    Releasing SNPedia on hg38 and hg19, refs #19811
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    e70310b582275ee7a3e72c78422522d680ddad53 Tue Sep 26 16:23:23 2017 -0700
    Hiding SNPedia track after finding possible issues on rr, refs #19811
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    ae77cc94fa70824ff53e92309e396b3b80e303d3 Tue Sep 26 22:02:03 2017 -0700
    fixing missing url on snpedia hgc page, refs #19811
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    fb0f67df2d5b9440397564fd51c8ebe7d9e5f41a Wed Sep 27 09:30:46 2017 -0700
    fixing my typo in trackDb
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    73d4101be877a1dbdb7b60100f161a4e3af3cd7f Wed Sep 27 13:38:11 2017 -0700
    removing exon numbers from SNP track, refs #19811
• src/hg/makeDb/trackDb/human/wgRna.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/joinedRmsk.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/lamprey/petMar1/trackDb.6way.ra
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    743448230a64fbfa56864e5859356ad04aa08da6 Mon Sep 25 14:14:11 2017 -0700
    petMar1: Repairing conservation tracks, refs #17373
• src/hg/makeDb/trackDb/lamprey/petMar1/trackDb.ra
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    743448230a64fbfa56864e5859356ad04aa08da6 Mon Sep 25 14:14:11 2017 -0700
    petMar1: Repairing conservation tracks, refs #17373
• src/hg/makeDb/trackDb/lancelet/braFlo1/trackDb.5way.ra
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    38db39721ae9435ab9632be019eef21666675ff9 Wed Sep 27 10:51:21 2017 -0700
    braFlo1: Minor fix, refs #17373
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    6522d37d8dfe57ee9738511e5ba3b52aaa2727c9 Wed Sep 27 16:00:02 2017 -0700
    adding proCoq1 to the build refs #20235
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    bbee903d8c6a6068f499b67a806828c3a00438fa Wed Sep 27 17:08:53 2017 -0700
    adding cebCap1 to the build refs #20237
• src/hg/makeDb/trackDb/medaka/oryLat2/trackDb.5way.ra
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    a1f00b031b523aa2dc8ec0fed25040f97549ef6c Mon Sep 25 13:21:52 2017 -0700
    oryLat2: Repairing conservation tracks, refs #17373
• src/hg/makeDb/trackDb/medaka/oryLat2/trackDb.ra
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    a1f00b031b523aa2dc8ec0fed25040f97549ef6c Mon Sep 25 13:21:52 2017 -0700
    oryLat2: Repairing conservation tracks, refs #17373
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
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    2122088264f08681d39dc30619640b576a2b6503 Thu Sep 28 14:32:24 2017 -0700
    Adding overrides for spMut uniprot variants track to get rid of table browser missing group error, refs #20174
• src/hg/makeDb/trackDb/orangutan/ponAbe2/trackDb.8way.ra
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    2662cb2ccd8cc5f633ed1b1fc3167611ab15a183 Mon Sep 25 14:30:47 2017 -0700
    ponAbe2: Repairing conservation tracks, refs #17373
• src/hg/makeDb/trackDb/orangutan/ponAbe2/trackDb.ra
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    2662cb2ccd8cc5f633ed1b1fc3167611ab15a183 Mon Sep 25 14:30:47 2017 -0700
    ponAbe2: Repairing conservation tracks, refs #17373
• src/hg/makeDb/trackDb/oreganno.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/primate/aotNan1/trackDb.ra
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    256f810d40ff5409aa15fe93e7e78487fd4692d4 Mon Sep 25 10:55:30 2017 -0700
    add gold table search rule refs #20196
• src/hg/makeDb/trackDb/primate/cebCap1/description.html
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    bbee903d8c6a6068f499b67a806828c3a00438fa Wed Sep 27 17:08:53 2017 -0700
    adding cebCap1 to the build refs #20237
• src/hg/makeDb/trackDb/primate/cebCap1/gap.html
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    bbee903d8c6a6068f499b67a806828c3a00438fa Wed Sep 27 17:08:53 2017 -0700
    adding cebCap1 to the build refs #20237
• src/hg/makeDb/trackDb/primate/cebCap1/gold.html
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    bbee903d8c6a6068f499b67a806828c3a00438fa Wed Sep 27 17:08:53 2017 -0700
    adding cebCap1 to the build refs #20237
• src/hg/makeDb/trackDb/primate/cebCap1/trackDb.ra
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    bbee903d8c6a6068f499b67a806828c3a00438fa Wed Sep 27 17:08:53 2017 -0700
    adding cebCap1 to the build refs #20237
• src/hg/makeDb/trackDb/primate/proCoq1/description.html
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    6522d37d8dfe57ee9738511e5ba3b52aaa2727c9 Wed Sep 27 16:00:02 2017 -0700
    adding proCoq1 to the build refs #20235
• src/hg/makeDb/trackDb/primate/proCoq1/gap.html
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    6522d37d8dfe57ee9738511e5ba3b52aaa2727c9 Wed Sep 27 16:00:02 2017 -0700
    adding proCoq1 to the build refs #20235
• src/hg/makeDb/trackDb/primate/proCoq1/gold.html
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    6522d37d8dfe57ee9738511e5ba3b52aaa2727c9 Wed Sep 27 16:00:02 2017 -0700
    adding proCoq1 to the build refs #20235
• src/hg/makeDb/trackDb/primate/proCoq1/trackDb.ra
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    6522d37d8dfe57ee9738511e5ba3b52aaa2727c9 Wed Sep 27 16:00:02 2017 -0700
    adding proCoq1 to the build refs #20235
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    01d5da01f26f7495eba206846795c65bb2b2fee9 Thu Sep 28 17:18:23 2017 -0700
    add gold/assembly track search rule refs #20235
• src/hg/makeDb/trackDb/rat/rn4/trackDb.9way.ra
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    328dae79d7e6c0f037d300b315996de1b87d8867 Mon Sep 25 14:47:49 2017 -0700
    rn4: Repairing conservation tracks, refs #17373
• src/hg/makeDb/trackDb/rat/rn4/trackDb.ra
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    328dae79d7e6c0f037d300b315996de1b87d8867 Mon Sep 25 14:47:49 2017 -0700
    rn4: Repairing conservation tracks, refs #17373
• src/hg/makeDb/trackDb/rat/rn6/trackDb.ra
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    2122088264f08681d39dc30619640b576a2b6503 Thu Sep 28 14:32:24 2017 -0700
    Adding overrides for spMut uniprot variants track to get rid of table browser missing group error, refs #20174
• src/hg/makeDb/trackDb/refSeqComposite.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/rmsk.html
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    637aa9ed60ac1724820e456e17ba9bcea5306e6d Fri Sep 29 17:15:40 2017 -0700
    Removing incorrect blurb, no rm
• src/hg/makeDb/trackDb/sacCer/sacCer2/trackDb.7way.ra
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    05df96effa5b51f3ead9b8c2ad561fd2320e38ec Mon Sep 25 15:30:05 2017 -0700
    sacCer2: Repairing conservation tracks, refs #17373
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    7566f207f0a5dfff5dce819e00592b1264bde7dd Wed Sep 27 12:27:58 2017 -0700
    sacCer2 and sacCer3: Adding correct desc page for Conservation track, refs #17373
• src/hg/makeDb/trackDb/sacCer/sacCer2/trackDb.ra
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    05df96effa5b51f3ead9b8c2ad561fd2320e38ec Mon Sep 25 15:30:05 2017 -0700
    sacCer2: Repairing conservation tracks, refs #17373
• src/hg/makeDb/trackDb/sacCer/sacCer3/trackDb.7way.ra
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    b5b51100cccadbaf4246f730b6e916d33469ce38 Mon Sep 25 15:36:47 2017 -0700
    sacCer3: Repairing conservation tracks, refs #17373
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    7566f207f0a5dfff5dce819e00592b1264bde7dd Wed Sep 27 12:27:58 2017 -0700
    sacCer2 and sacCer3: Adding correct desc page for Conservation track, refs #17373
• src/hg/makeDb/trackDb/sacCer/sacCer3/trackDb.ra
  • lines changed 35, context: html, text, full: html, text
    b5b51100cccadbaf4246f730b6e916d33469ce38 Mon Sep 25 15:36:47 2017 -0700
    sacCer3: Repairing conservation tracks, refs #17373
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    2122088264f08681d39dc30619640b576a2b6503 Thu Sep 28 14:32:24 2017 -0700
    Adding overrides for spMut uniprot variants track to get rid of table browser missing group error, refs #20174
• src/hg/makeDb/trackDb/sibGene.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/sibTxGraph.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/spAnnot.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/spMut.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/spUniprot.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/squirt/ci3/trackDb.ra
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    2122088264f08681d39dc30619640b576a2b6503 Thu Sep 28 14:32:24 2017 -0700
    Adding overrides for spMut uniprot variants track to get rid of table browser missing group error, refs #20174
• src/hg/makeDb/trackDb/tagTypes.tab
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    0975811fb5f9a2377b5618f585fc7b410f322957 Fri Sep 29 12:42:29 2017 -0700
    forgot to commit tagTypes
• src/hg/makeDb/trackDb/trackDb.uniprot.ra
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    7127a1747d0086f39f521bb7bd089fb2c56fb3f7 Mon Sep 25 23:00:00 2017 -0700
    renaming the uniprot tracks and trying to add bigBed search (which will probably not work), refs #20174
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    f204b14668d62a98128526a40bfbad84dbb88b76 Thu Sep 28 14:55:41 2017 -0700
    allowing filtering by score in uniProt
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    ee315f7e1c8bda38b3154a59e5317b861c5e8896 Fri Sep 29 09:20:58 2017 -0700
    adding score filter to uniprot
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    51d57bbad94752a57587aca4a084b86ce38a92de Fri Sep 29 11:15:27 2017 -0700
    revamping the uniprot sequences track, refs #10174
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    ce597cd84f8d4b79ba91e957e9b1d8a2f6c0d90f Fri Sep 29 11:28:34 2017 -0700
    adding to the uniprot sequences track, refs #10174
• src/hg/makeDb/trackDb/ucscGenePfam.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/uniprot.html
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    fab0fa6589c60fa0dc15c5daf41ef1fa6c4efe11 Mon Sep 25 14:24:17 2017 -0700
    HTML escaping some quotes in the uniprot track description page, refs #20174
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    306c99127db5d42018d56b9fefae2ffe83ce1811 Mon Sep 25 16:59:36 2017 -0700
    Fix a typo and directly link to uniprotkb hub from uniprot proteins track description, refs #20174
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    27d46b6177ffbe37e04192475d254e36f9a9ddda Thu Sep 28 17:17:28 2017 -0700
    Work in progress uniprot subtrack description table, refs #20174
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    99812253807121cf2b4fd5fc0f0a91a93821b4a9 Fri Sep 29 10:22:18 2017 -0700
    improving uniprot docs, refs # 20174
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    1638a672100c7122b104a79058857f0ead0ab849 Fri Sep 29 14:16:48 2017 -0700
    Adding links to uniprot definitions, refs #20174
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    93d446dfddd81fe3c66b80daa95caa04a487ffe5 Fri Sep 29 14:45:44 2017 -0700
    Removing uniprot description links, refs #20174
• src/hg/makeDb/trackDb/wgEncodeGencodeCredits1.shared.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/worm/ce10/trackDb.ra
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    2122088264f08681d39dc30619640b576a2b6503 Thu Sep 28 14:32:24 2017 -0700
    Adding overrides for spMut uniprot variants track to get rid of table browser missing group error, refs #20174
• src/hg/makeDb/trackDb/worm/ce11/trackDb.ra
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    2122088264f08681d39dc30619640b576a2b6503 Thu Sep 28 14:32:24 2017 -0700
    Adding overrides for spMut uniprot variants track to get rid of table browser missing group error, refs #20174
• src/hg/makeDb/trackDb/xenTro/intronEst.html
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    6be40b598da6e6e0b19cc3956b9ac4331225143c Tue Sep 26 08:54:12 2017 -0700
    Fixing broken links found by the broken link report for xenTro7, no Redmine
• src/hg/makeDb/trackDb/xenTro/mgcFullMrna.html
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    6be40b598da6e6e0b19cc3956b9ac4331225143c Tue Sep 26 08:54:12 2017 -0700
    Fixing broken links found by the broken link report for xenTro7, no Redmine
• src/hg/makeDb/trackDb/xenTro/xenTro1/trackDb.5way.ra
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    95686910df6ca6a43bb29eececc3b77c78db3c42 Mon Sep 25 16:02:20 2017 -0700
    xenTro1: Repairing conservation tracks, refs #17373
• src/hg/makeDb/trackDb/xenTro/xenTro1/trackDb.ra
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    95686910df6ca6a43bb29eececc3b77c78db3c42 Mon Sep 25 16:02:20 2017 -0700
    xenTro1: Repairing conservation tracks, refs #17373
• src/hg/makeDb/trackDb/xenTro/xenTro2/trackDb.7way.ra
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    7ea75daf3703c085e360bc7d86ef37a80839030c Mon Sep 25 16:25:47 2017 -0700
    xenTro2: Repairing conservation tracks, refs #17373
• src/hg/makeDb/trackDb/xenTro/xenTro2/trackDb.ra
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    7ea75daf3703c085e360bc7d86ef37a80839030c Mon Sep 25 16:25:47 2017 -0700
    xenTro2: Repairing conservation tracks, refs #17373
• src/hg/makeDb/trackDb/xenoEst.html
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    8abeb923c9bfc780b63b44255a2b8495a3fe411c Wed Sep 27 16:40:23 2017 -0700
    Fixing broken links found by the broken link report for hg38, no Redmine
• src/hg/makeDb/trackDb/zebrafish/danRer10/trackDb.ra
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    2122088264f08681d39dc30619640b576a2b6503 Thu Sep 28 14:32:24 2017 -0700
    Adding overrides for spMut uniprot variants track to get rid of table browser missing group error, refs #20174
• src/hg/makeDb/trackDb/zebrafish/danRer7/trackDb.ra
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    2122088264f08681d39dc30619640b576a2b6503 Thu Sep 28 14:32:24 2017 -0700
    Adding overrides for spMut uniprot variants track to get rid of table browser missing group error, refs #20174
• src/hg/makefile
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    2bedcbdfd72537a7da852585942d1f0ef8296cbb Tue Sep 26 10:53:31 2017 -0700
    clean up browser bins list to make it neat no redmine
• src/hg/utils/automation/doNcbiRefSeq.pl
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    feb29c6e9dc36eb2ef9d150b35243e3987feb7a4 Thu Sep 28 11:58:01 2017 -0700
    ncbiRefSeqLink should contain only the items in ncbiRefSeq, not ncbiRefSeqOther. Re-ran doNcbiRefSeq.pl on hg38 and mm10. refs #18997
• src/hg/utils/phyloTrees/216.nh
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    73cd8f9f3fb103862b74fa29bc6467a5142442bf Tue Sep 26 15:11:19 2017 -0700
    adding phaCin1 koala, neoSch1 monk seal, odoTex1 white tailed deer no redmine
• src/hg/utils/phyloTrees/216way.commonNames.nh
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    73cd8f9f3fb103862b74fa29bc6467a5142442bf Tue Sep 26 15:11:19 2017 -0700
    adding phaCin1 koala, neoSch1 monk seal, odoTex1 white tailed deer no redmine
• src/utils/qa/weeklybld/buildEnv.csh
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    933cff97fa09822f8ebe7c52eff56ddd307cb21e Mon Oct 2 10:24:40 2017 -0700
    v356 preview2 refs #20233

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