File Changes for kate

v357_preview2 to v357_base (2017-10-23 to 2017-10-30) v357

• src/hg/hgTracks/gtexEqtlClusterTrack.c
  • lines changed 9, context: html, text, full: html, text
    a15e95bf88dc310df10549c6bb17c288654aad64 Wed Oct 25 10:58:43 2017 -0700
    Fix filter problem noted in RM note #77; effect and prob filters should change item label to correspond to eQTLs remaining in combined item after filtering. refs #15646
• src/hg/hgc/gtexEqtlClusterClick.c
  • lines changed 6, context: html, text, full: html, text
    2ffc9d13a7475fbf6eb60a6b50d463ee11e7ff41 Wed Oct 25 18:06:54 2017 -0700
    Implement V2 GTEx eQTL clusters as described in RM as 'permissive with ID'. This adds Ensembl gene ID to schemas. Also adding summary columns to cluster track (maxEffect, maxPvalue, effectType) to provide alternative to parsing comma-sep fields for table filtering. refs #15646
• src/hg/inc/gtexEqtlCluster.h
  • lines changed 7, context: html, text, full: html, text
    2ffc9d13a7475fbf6eb60a6b50d463ee11e7ff41 Wed Oct 25 18:06:54 2017 -0700
    Implement V2 GTEx eQTL clusters as described in RM as 'permissive with ID'. This adds Ensembl gene ID to schemas. Also adding summary columns to cluster track (maxEffect, maxPvalue, effectType) to provide alternative to parsing comma-sep fields for table filtering. refs #15646
• src/hg/lib/gtexEqtl.as
  • lines changed 3, context: html, text, full: html, text
    2ffc9d13a7475fbf6eb60a6b50d463ee11e7ff41 Wed Oct 25 18:06:54 2017 -0700
    Implement V2 GTEx eQTL clusters as described in RM as 'permissive with ID'. This adds Ensembl gene ID to schemas. Also adding summary columns to cluster track (maxEffect, maxPvalue, effectType) to provide alternative to parsing comma-sep fields for table filtering. refs #15646
• src/hg/lib/gtexEqtl.sql
  • lines changed 8, context: html, text, full: html, text
    2ffc9d13a7475fbf6eb60a6b50d463ee11e7ff41 Wed Oct 25 18:06:54 2017 -0700
    Implement V2 GTEx eQTL clusters as described in RM as 'permissive with ID'. This adds Ensembl gene ID to schemas. Also adding summary columns to cluster track (maxEffect, maxPvalue, effectType) to provide alternative to parsing comma-sep fields for table filtering. refs #15646
• src/hg/lib/gtexEqtlCluster.as
  • lines changed 5, context: html, text, full: html, text
    2ffc9d13a7475fbf6eb60a6b50d463ee11e7ff41 Wed Oct 25 18:06:54 2017 -0700
    Implement V2 GTEx eQTL clusters as described in RM as 'permissive with ID'. This adds Ensembl gene ID to schemas. Also adding summary columns to cluster track (maxEffect, maxPvalue, effectType) to provide alternative to parsing comma-sep fields for table filtering. refs #15646
• src/hg/lib/gtexEqtlCluster.c
  • lines changed 33, context: html, text, full: html, text
    2ffc9d13a7475fbf6eb60a6b50d463ee11e7ff41 Wed Oct 25 18:06:54 2017 -0700
    Implement V2 GTEx eQTL clusters as described in RM as 'permissive with ID'. This adds Ensembl gene ID to schemas. Also adding summary columns to cluster track (maxEffect, maxPvalue, effectType) to provide alternative to parsing comma-sep fields for table filtering. refs #15646
• src/hg/lib/gtexEqtlCluster.sql
  • lines changed 9, context: html, text, full: html, text
    2ffc9d13a7475fbf6eb60a6b50d463ee11e7ff41 Wed Oct 25 18:06:54 2017 -0700
    Implement V2 GTEx eQTL clusters as described in RM as 'permissive with ID'. This adds Ensembl gene ID to schemas. Also adding summary columns to cluster track (maxEffect, maxPvalue, effectType) to provide alternative to parsing comma-sep fields for table filtering. refs #15646
• src/hg/makeDb/trackDb/human/hg19/gtexEqtl.ra
  • lines changed 219, context: html, text, full: html, text
    3859b3dff43bb126d2b08b2f3c2d1e4f9bfa14d8 Tue Oct 24 11:11:53 2017 -0700
    Cleanup GTEx eQTL track config; retire v1 designation, remove trackDb settings for non-EQTL tissues. refs #15646
• src/hg/makeDb/trackDb/human/hg19/gtexEqtl.v1.ra
  • lines changed 416, context: html, text, full: html, text
    3859b3dff43bb126d2b08b2f3c2d1e4f9bfa14d8 Tue Oct 24 11:11:53 2017 -0700
    Cleanup GTEx eQTL track config; retire v1 designation, remove trackDb settings for non-EQTL tissues. refs #15646
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    3859b3dff43bb126d2b08b2f3c2d1e4f9bfa14d8 Tue Oct 24 11:11:53 2017 -0700
    Cleanup GTEx eQTL track config; retire v1 designation, remove trackDb settings for non-EQTL tissues. refs #15646