Commits for kate

v357_preview2 to v357_base (2017-10-23 to 2017-10-30) v357

3859b3dff43bb126d2b08b2f3c2d1e4f9bfa14d8 Tue Oct 24 11:11:53 2017 -0700

• Cleanup GTEx eQTL track config; retire v1 designation, remove trackDb settings for non-EQTL tissues. refs #15646
  • src/hg/makeDb/trackDb/human/hg19/gtexEqtl.ra - lines changed 219, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/gtexEqtl.v1.ra - lines changed 416, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text

a15e95bf88dc310df10549c6bb17c288654aad64 Wed Oct 25 10:58:43 2017 -0700

• Fix filter problem noted in RM note #77; effect and prob filters should change item label to correspond to eQTLs remaining in combined item after filtering. refs #15646
  • src/hg/hgTracks/gtexEqtlClusterTrack.c - lines changed 9, context: html, text, full: html, text

2ffc9d13a7475fbf6eb60a6b50d463ee11e7ff41 Wed Oct 25 18:06:54 2017 -0700

• Implement V2 GTEx eQTL clusters as described in RM as 'permissive with ID'. This adds Ensembl gene ID to schemas. Also adding summary columns to cluster track (maxEffect, maxPvalue, effectType) to provide alternative to parsing comma-sep fields for table filtering. refs #15646
  • src/hg/hgc/gtexEqtlClusterClick.c - lines changed 6, context: html, text, full: html, text
  • src/hg/inc/gtexEqtlCluster.h - lines changed 7, context: html, text, full: html, text
  • src/hg/lib/gtexEqtl.as - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/gtexEqtl.sql - lines changed 8, context: html, text, full: html, text
  • src/hg/lib/gtexEqtlCluster.as - lines changed 5, context: html, text, full: html, text
  • src/hg/lib/gtexEqtlCluster.c - lines changed 33, context: html, text, full: html, text
  • src/hg/lib/gtexEqtlCluster.sql - lines changed 9, context: html, text, full: html, text

bb97098b83321eec957a696b7bc34754aad1db56 Wed Oct 25 18:07:09 2017 -0700

• Merge branch 'eqtl-v2'