Commits for markd

v357_preview to v357_preview2 (2017-10-16 to 2017-10-23) v357

f7522e86274cd85385dd457579ee209867a9233d Mon Oct 16 15:04:57 2017 -0700

• added pslRc command
  • src/hg/utils/makefile - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/pslRc/makefile - lines changed 3, context: html, text, full: html, text
  • src/hg/utils/pslRc/pslRc.c - lines changed 55, context: html, text, full: html, text
  • src/hg/utils/pslRc/tests/expected/mrnaTest.psl - lines changed 7, context: html, text, full: html, text
  • src/hg/utils/pslRc/tests/expected/transTest.psl - lines changed 12, context: html, text, full: html, text
  • src/hg/utils/pslRc/tests/expected/withSeqTest.psl - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/pslRc/tests/makefile - lines changed 35, context: html, text, full: html, text

f63458a827952f14b1b1465a6da88c19d4facb9b Mon Oct 16 15:20:32 2017 -0700

• fixed compile error when CRAM enabled
  • src/htslib/sam.c - lines changed 2, context: html, text, full: html, text

9b2fadbb348edae6d5a39166a4f34d0cf6abefb6 Mon Oct 16 15:21:06 2017 -0700

• gitignore generated header file
  • .gitignore - lines changed 1, context: html, text, full: html, text

e828765a12077044130f69a8d70e233188ebdbc9 Tue Oct 17 13:55:48 2017 -0700

• remove 2-way pseudo and ploy-A from HTML descriptions for lift of gencode to hg19
  • src/hg/makeDb/outside/gencode/gencodeGenerateTrackDbs - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV27lift37.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/wgEncodeGencodeDisplayLift1.shared.html - lines changed 214, context: html, text, full: html, text

a7bbaef21490d4f4d24febc224b9e0b3f172bd3a Tue Oct 17 14:08:24 2017 -0700

• removed gencode exon support joiner rule for lifted releases
  • src/hg/makeDb/outside/gencode/gencodeGenerateTrackDbs - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/schema/all.joiner - lines changed 5, context: html, text, full: html, text

1c0aaa4222e3494ae2c0e52219a91f4e5e7eaaaa Tue Oct 17 16:17:50 2017 -0700

• updated GENCODE credits and use general credits include HTML in super track descriptions
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeSuper.html - lines changed 103, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeSuper.html - lines changed 122, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/wgEncodeGencodeCredits1.shared.html - lines changed 13, context: html, text, full: html, text

3aa01f2c24c384bcaeff2ca510be28c8afd2549f Mon Oct 23 09:06:02 2017 -0700

• added gencode version to all gencode hgc title
  • src/hg/hgc/gencodeClick.c - lines changed 11, context: html, text, full: html, text