File Changes for hiram

v364_preview2 to v364_base (2018-04-09 to 2018-04-16) v364

• src/hg/inc/versionInfo.h
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    b1786f0fdee67f371442dd2a55ee3e74e034c58e Mon Apr 16 10:47:03 2018 -0700
    New version number v364
• src/hg/makeDb/doc/hg19.txt
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    e5c7e0590aa25c0e1e8f24a680bd466f5c283ca8 Tue Apr 10 09:47:28 2018 -0700
    lastz chainNet hg19 to susScr11 per user request refs #21205
• src/hg/makeDb/doc/micMur3/lastzRuns.sh
  • lines changed 79, context: html, text, full: html, text
    565a2461aaeadb231f8230edbecafbc31a65ebaf Mon Apr 9 11:37:38 2018 -0700
    alignment to otoGar3 no redmine
• src/hg/makeDb/doc/panTro6/initialBuild.txt
  • lines changed 36, context: html, text, full: html, text
    cc6216a37eb802a1f18e08d7cd67091e113d05cd Mon Apr 9 10:55:22 2018 -0700
    QA Ready refs #20979
• src/hg/makeDb/doc/ponAbe3/initialBuild.txt
  • lines changed 44, context: html, text, full: html, text
    1fde77471f89d0dc2b7dfdb818006c3937387c1e Wed Apr 11 10:50:48 2018 -0700
    QA Ready refs #20980
• src/hg/makeDb/schema/all.joiner
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    32eb29acf378790819504243edbecfed1572875e Fri Apr 13 07:48:08 2018 -0700
    adding rules for ponAbe3 refs #20980
• src/hg/makeDb/trackDb/human/chainNetPrimate.ra
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    e0ff33694e5412f680473f55e78c317026a977f8 Mon Apr 9 10:35:53 2018 -0700
    adding ponAbe3 trackDb chainNet refs #20980
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.euarchontoglireChainNet.ra
  • lines changed 21, context: html, text, full: html, text
    d265425a43cec6e383b658dbb3b77198e7c2d7e9 Mon Apr 9 10:43:26 2018 -0700
    adding ponAbe3 trackDb chainNet refs #20980
• src/hg/makeDb/trackDb/orangutan/ponAbe3/trackDb.ra
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    3054c9af63d2d71f166a31d871f702bdc9548632 Wed Apr 11 10:42:12 2018 -0700
    adding ncbiRefSeq refs #20980
• src/hg/makeDb/trackDb/trackDb.chainNet.primates.ra
  • lines changed 106, context: html, text, full: html, text
    8a3362658b89b53c146ba15755a0c6509b3b6102 Mon Apr 9 10:35:15 2018 -0700
    adding ponAbe3 trackDb chainNet refs #20980
• src/hg/makeDb/trackDb/trackDb.chainNet.ra
  • lines changed 50, context: html, text, full: html, text
    8a3362658b89b53c146ba15755a0c6509b3b6102 Mon Apr 9 10:35:15 2018 -0700
    adding ponAbe3 trackDb chainNet refs #20980
• src/hg/utils/automation/doNcbiRefSeq.pl
  • lines changed 1, context: html, text, full: html, text
    7327d97c0945b265384cf3122914d32a554a4e39 Wed Apr 11 10:21:54 2018 -0700
    using pslPosTarget to avoid pslRecalcMatch error non-translated psls complaint refs #20980
• src/hg/utils/automation/doSameSpeciesLiftOver.pl
  • lines changed 55, context: html, text, full: html, text
    223debf4f487ad0edd2dd50753d4be1e2e7f1910 Fri Apr 13 16:45:33 2018 -0700
    adding options to work outside UCSC environment refs #21269 #18874
  • lines changed 27, context: html, text, full: html, text
    1175cace1075f90b600d472d522928e21e80e387 Sat Apr 14 10:34:49 2018 -0700
    completed options to work outside UCSC environment refs #21269 #18874
• src/hg/utils/automation/openStack/initParasol
  • lines changed 127, context: html, text, full: html, text
    748304915544feadc3250d256a48d3365f06d088 Mon Apr 16 10:43:30 2018 -0700
    up to date parasol install scripts for open stack refs #18874
• src/hg/utils/automation/openStack/nodeReport.sh
  • lines changed 10, context: html, text, full: html, text
    748304915544feadc3250d256a48d3365f06d088 Mon Apr 16 10:43:30 2018 -0700
    up to date parasol install scripts for open stack refs #18874
• src/hg/utils/automation/openStack/paraHubSetup.sh
  • lines changed 94, context: html, text, full: html, text
    e33295dd5956e0739a3a2584e5574fd775d252b9 Mon Apr 16 10:41:26 2018 -0700
    up to date parasol install scripts for open stack refs #18874
• src/hg/utils/automation/openStack/paraNodeSetup.sh.template
  • lines changed 63, context: html, text, full: html, text
    e33295dd5956e0739a3a2584e5574fd775d252b9 Mon Apr 16 10:41:26 2018 -0700
    up to date parasol install scripts for open stack refs #18874
• src/hg/utils/automation/openStack/startParaHub.sh
  • lines changed 201, context: html, text, full: html, text
    e33295dd5956e0739a3a2584e5574fd775d252b9 Mon Apr 16 10:41:26 2018 -0700
    up to date parasol install scripts for open stack refs #18874
• src/hg/utils/automation/openStack/startParaNode.sh
  • lines changed 189, context: html, text, full: html, text
    e33295dd5956e0739a3a2584e5574fd775d252b9 Mon Apr 16 10:41:26 2018 -0700
    up to date parasol install scripts for open stack refs #18874
• src/inc/srcVersion.h
  • lines changed 1, context: html, text, full: html, text
    b1786f0fdee67f371442dd2a55ee3e74e034c58e Mon Apr 16 10:47:03 2018 -0700
    New version number v364
• src/utils/makefile
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    3bf41831e00fb0bcee48b6743884d1e1fd5c1489 Sat Apr 14 09:33:32 2018 -0700
    moving endsInLf to user apps required by doSameSpeciesLiftOver.pl refs #21269 #18874
• src/utils/qa/weeklybld/buildEnv.csh
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    f504e7b48e5b8c7b0383bd17728cb94662673100 Mon Apr 16 10:34:52 2018 -0700
    v363 final buildrefs #21221