Commits for hiram

v364_preview2 to v364_base (2018-04-09 to 2018-04-16) v364

8a3362658b89b53c146ba15755a0c6509b3b6102 Mon Apr 9 10:35:15 2018 -0700

• adding ponAbe3 trackDb chainNet refs #20980
  • src/hg/makeDb/trackDb/trackDb.chainNet.primates.ra - lines changed 106, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra - lines changed 50, context: html, text, full: html, text

e0ff33694e5412f680473f55e78c317026a977f8 Mon Apr 9 10:35:53 2018 -0700

• adding ponAbe3 trackDb chainNet refs #20980
  • src/hg/makeDb/trackDb/human/chainNetPrimate.ra - lines changed 19, context: html, text, full: html, text

d265425a43cec6e383b658dbb3b77198e7c2d7e9 Mon Apr 9 10:43:26 2018 -0700

• adding ponAbe3 trackDb chainNet refs #20980
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.euarchontoglireChainNet.ra - lines changed 21, context: html, text, full: html, text

cc6216a37eb802a1f18e08d7cd67091e113d05cd Mon Apr 9 10:55:22 2018 -0700

• QA Ready refs #20979
  • src/hg/makeDb/doc/panTro6/initialBuild.txt - lines changed 36, context: html, text, full: html, text

565a2461aaeadb231f8230edbecafbc31a65ebaf Mon Apr 9 11:37:38 2018 -0700

• alignment to otoGar3 no redmine
  • src/hg/makeDb/doc/micMur3/lastzRuns.sh - lines changed 79, context: html, text, full: html, text

e5c7e0590aa25c0e1e8f24a680bd466f5c283ca8 Tue Apr 10 09:47:28 2018 -0700

• lastz chainNet hg19 to susScr11 per user request refs #21205
  • src/hg/makeDb/doc/hg19.txt - lines changed 80, context: html, text, full: html, text

7327d97c0945b265384cf3122914d32a554a4e39 Wed Apr 11 10:21:54 2018 -0700

• using pslPosTarget to avoid pslRecalcMatch error non-translated psls complaint refs #20980
  • src/hg/utils/automation/doNcbiRefSeq.pl - lines changed 1, context: html, text, full: html, text

3054c9af63d2d71f166a31d871f702bdc9548632 Wed Apr 11 10:42:12 2018 -0700

• adding ncbiRefSeq refs #20980
  • src/hg/makeDb/trackDb/orangutan/ponAbe3/trackDb.ra - lines changed 2, context: html, text, full: html, text

1fde77471f89d0dc2b7dfdb818006c3937387c1e Wed Apr 11 10:50:48 2018 -0700

• QA Ready refs #20980
  • src/hg/makeDb/doc/ponAbe3/initialBuild.txt - lines changed 44, context: html, text, full: html, text

32eb29acf378790819504243edbecfed1572875e Fri Apr 13 07:48:08 2018 -0700

• adding rules for ponAbe3 refs #20980
  • src/hg/makeDb/schema/all.joiner - lines changed 8, context: html, text, full: html, text

223debf4f487ad0edd2dd50753d4be1e2e7f1910 Fri Apr 13 16:45:33 2018 -0700

• adding options to work outside UCSC environment refs #21269 #18874
  • src/hg/utils/automation/doSameSpeciesLiftOver.pl - lines changed 55, context: html, text, full: html, text

3bf41831e00fb0bcee48b6743884d1e1fd5c1489 Sat Apr 14 09:33:32 2018 -0700

• moving endsInLf to user apps required by doSameSpeciesLiftOver.pl refs #21269 #18874
  • src/utils/makefile - lines changed 2, context: html, text, full: html, text

1175cace1075f90b600d472d522928e21e80e387 Sat Apr 14 10:34:49 2018 -0700

• completed options to work outside UCSC environment refs #21269 #18874
  • src/hg/utils/automation/doSameSpeciesLiftOver.pl - lines changed 27, context: html, text, full: html, text

f504e7b48e5b8c7b0383bd17728cb94662673100 Mon Apr 16 10:34:52 2018 -0700

• v363 final buildrefs #21221
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text

e33295dd5956e0739a3a2584e5574fd775d252b9 Mon Apr 16 10:41:26 2018 -0700

• up to date parasol install scripts for open stack refs #18874
  • src/hg/utils/automation/openStack/paraHubSetup.sh - lines changed 94, context: html, text, full: html, text
  • src/hg/utils/automation/openStack/paraNodeSetup.sh.template - lines changed 63, context: html, text, full: html, text
  • src/hg/utils/automation/openStack/startParaHub.sh - lines changed 201, context: html, text, full: html, text
  • src/hg/utils/automation/openStack/startParaNode.sh - lines changed 189, context: html, text, full: html, text

748304915544feadc3250d256a48d3365f06d088 Mon Apr 16 10:43:30 2018 -0700

• up to date parasol install scripts for open stack refs #18874
  • src/hg/utils/automation/openStack/initParasol - lines changed 127, context: html, text, full: html, text
  • src/hg/utils/automation/openStack/nodeReport.sh - lines changed 10, context: html, text, full: html, text

b1786f0fdee67f371442dd2a55ee3e74e034c58e Mon Apr 16 10:47:03 2018 -0700

• New version number v364
  • src/hg/inc/versionInfo.h - lines changed 1, context: html, text, full: html, text
  • src/inc/srcVersion.h - lines changed 1, context: html, text, full: html, text