Commits for braney

v364_base to v365_preview (2018-04-16 to 2018-04-23) v365

5b1c3cb6e7ce60e71edfb9e7237eca2fe7a02910 Wed Apr 18 15:45:25 2018 -0700

• fixed bug #21294 by re-introducing some code that checks to see if a name has already been used before appending some uniqueifying text
  • src/hg/hgCollection/hgCollection.c - lines changed 7, context: html, text, full: html, text

6b764f47d409d5ecd9813e0b3e4289c080167082 Thu Apr 19 20:24:07 2018 -0700

• uniProt and proteins database and utility for mm10 ucsc genes build
  • src/hg/makeDb/doc/proteins/180404.txt - lines changed 200, context: html, text, full: html, text
  • src/hg/makeDb/doc/uniProt/sp180404.txt - lines changed 69, context: html, text, full: html, text
  • src/hg/utils/stripPatentIds/makefile - lines changed 3, context: html, text, full: html, text
  • src/hg/utils/stripPatentIds/stripPatentIds.c - lines changed 46, context: html, text, full: html, text

79d582d68e04b0b5307a4f96b40e8ca22c20c910 Thu Apr 19 20:31:09 2018 -0700

• more things to ignore in genbank
  • src/hg/makeDb/genbank/etc/ignore.idx - lines changed 111, context: html, text, full: html, text

88ad7bb93b6f132899e1cc56ac3f69b124d32e48 Sat Apr 21 09:40:25 2018 -0700

• make a test version of Pfam track without TC filtering
  • src/hg/makeDb/doc/ucscGenes/hg19.ucscGenes14.csh - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/doc/ucscGenes/hg38.ucscGenes17.sh - lines changed 3, context: html, text, full: html, text

9405731914c2e4957961ea4c611986c3c3cb2e77 Sat Apr 21 09:46:46 2018 -0700

• changes for mm10 ucsc genes
  • src/hg/makeDb/doc/ucscGenes/mm10.ucscGenes17.csh - lines changed 213, context: html, text, full: html, text
  • src/hg/makeDb/doc/ucscGenes/mm10.ucscGenes17.csh.00 - lines changed 1655, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/txGene/txGeneAlias/txGeneAlias.c - lines changed 2, context: html, text, full: html, text
  • src/hg/txGene/txGeneFromBed/txGeneFromBed.c - lines changed 1, context: html, text, full: html, text
  • src/hg/txGene/txGeneXref/txGeneXref.c - lines changed 5, context: html, text, full: html, text

333ce7ffd4420b76622e9fff7e06e58fdedd8292 Sat Apr 21 09:47:54 2018 -0700

• all.joiner changes for mm10 ucsc genes
  • src/hg/makeDb/schema/all.joiner - lines changed 7, context: html, text, full: html, text

6cf93d53f39124cee683b303555ec71846d99cc1 Sat Apr 21 09:48:42 2018 -0700

• add Angie's test assembly to the genbank proces
  • src/hg/makeDb/genbank/src/lib/gbGenome.c - lines changed 2, context: html, text, full: html, text