All File Changes

v371_preview to v371_preview2 (2018-08-27 to 2018-09-03) v371

• confs/genome-browser-mirror.hg.conf
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    5381c2366c65d145243198819e45db1845598133 Mon Aug 27 16:23:19 2018 -0700
    dregs of non-kent/src/ files for change cse to soe
• confs/hgwbeta.hg.conf
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    5381c2366c65d145243198819e45db1845598133 Mon Aug 27 16:23:19 2018 -0700
    dregs of non-kent/src/ files for change cse to soe
• confs/hgwdev.hg.conf
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    5381c2366c65d145243198819e45db1845598133 Mon Aug 27 16:23:19 2018 -0700
    dregs of non-kent/src/ files for change cse to soe
• confs/preview.hg.conf
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    d8d970409b867e27bcf3c039ef235c7805676845 Sun Sep 2 01:12:00 2018 -0700
    Installing updated hg.conf files from UCSC servers
• confs/rr.hg.conf
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    5381c2366c65d145243198819e45db1845598133 Mon Aug 27 16:23:19 2018 -0700
    dregs of non-kent/src/ files for change cse to soe
• java/src/edu/ucsc/genome/qa/cgiCheck/canFam1.props
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    5381c2366c65d145243198819e45db1845598133 Mon Aug 27 16:23:19 2018 -0700
    dregs of non-kent/src/ files for change cse to soe
• java/src/edu/ucsc/genome/qa/cgiCheck/ci1.props
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    5381c2366c65d145243198819e45db1845598133 Mon Aug 27 16:23:19 2018 -0700
    dregs of non-kent/src/ files for change cse to soe
• java/src/edu/ucsc/genome/qa/cgiCheck/full.props
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    5381c2366c65d145243198819e45db1845598133 Mon Aug 27 16:23:19 2018 -0700
    dregs of non-kent/src/ files for change cse to soe
• java/src/edu/ucsc/genome/qa/cgiCheck/hg17.props
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    5381c2366c65d145243198819e45db1845598133 Mon Aug 27 16:23:19 2018 -0700
    dregs of non-kent/src/ files for change cse to soe
• java/src/edu/ucsc/genome/qa/cgiCheck/hgw1.props
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    5381c2366c65d145243198819e45db1845598133 Mon Aug 27 16:23:19 2018 -0700
    dregs of non-kent/src/ files for change cse to soe
• java/src/edu/ucsc/genome/qa/cgiCheck/hour.props
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    5381c2366c65d145243198819e45db1845598133 Mon Aug 27 16:23:19 2018 -0700
    dregs of non-kent/src/ files for change cse to soe
• java/src/edu/ucsc/genome/qa/cgiCheck/mm5.props
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    5381c2366c65d145243198819e45db1845598133 Mon Aug 27 16:23:19 2018 -0700
    dregs of non-kent/src/ files for change cse to soe
• java/src/edu/ucsc/genome/qa/cgiCheck/quick.props
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    5381c2366c65d145243198819e45db1845598133 Mon Aug 27 16:23:19 2018 -0700
    dregs of non-kent/src/ files for change cse to soe
• java/src/edu/ucsc/genome/qa/cgiCheck/quickAll.props
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    5381c2366c65d145243198819e45db1845598133 Mon Aug 27 16:23:19 2018 -0700
    dregs of non-kent/src/ files for change cse to soe
• java/src/edu/ucsc/genome/qa/monitor/ApacheReport.java
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    5381c2366c65d145243198819e45db1845598133 Mon Aug 27 16:23:19 2018 -0700
    dregs of non-kent/src/ files for change cse to soe
• java/src/edu/ucsc/genome/qa/monitor/apacheDay.props
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    5381c2366c65d145243198819e45db1845598133 Mon Aug 27 16:23:19 2018 -0700
    dregs of non-kent/src/ files for change cse to soe
• java/src/edu/ucsc/genome/qa/monitor/apacheHour.props
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    5381c2366c65d145243198819e45db1845598133 Mon Aug 27 16:23:19 2018 -0700
    dregs of non-kent/src/ files for change cse to soe
• python/lib/ucscGb/qa/tables/checkGapOverlap.py
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    5381c2366c65d145243198819e45db1845598133 Mon Aug 27 16:23:19 2018 -0700
    dregs of non-kent/src/ files for change cse to soe
• python/users/kent/django/mysite/cvDb/README
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    5381c2366c65d145243198819e45db1845598133 Mon Aug 27 16:23:19 2018 -0700
    dregs of non-kent/src/ files for change cse to soe
• src/hg/cirm/cdw/cdwPublicSubset/cdwPublicSubset.c
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    9e7f487e9bc078ae579c441a2b4faa34c968187f Mon Aug 27 15:54:31 2018 -0700
    dding cdwFileFacets to the tables that cdwPublicSubset deals with.
• src/hg/cirm/cdw/lib/cdwValid.c
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    6836f8218c4f0794d91674e7c5626f47323fd117 Wed Aug 15 10:10:25 2018 -0700
    Changing tag name 'condition' to 'experimental_condition' to avoid SQL reserved word conflict.
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    b4b6d5a4c88ad735fc1bcc595bd56c0eb8c3052d Mon Aug 27 15:53:59 2018 -0700
    Adding in index?_i?_name fields and removing barcode and cellular_differentiation_process so as to sync cdwValid.c code with latest version of tagsV5 spreadsheet.
• src/hg/cirm/gateway/htdocs/projects.html
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    6b476a5e0e42e325cae1bda3591b2ae21c4c9a43 Thu Aug 30 15:01:51 2018 -0700
    Updating link to quakBrainGeo, refs #21833
• src/hg/das/das.c
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    e4c85f62505d21f22ba7cf3cc08312ca56835df9 Mon Aug 27 15:53:35 2018 -0700
    dregs of dregs, i.e. mostly email domains: changing cse to soe
• src/hg/encode/DAFs/2.0/awgUniform.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/broadChipSeq.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/buOrchid.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/caltechElements.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/caltechMm9Histone.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/caltechMm9RnaSeq.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/caltechMm9Tfbs.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/caltechRnaSeq.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/cshlLongRnaSeq.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/cshlShortRnaSeq.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/cshlSupportDocs.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/dukeDnaseSeq.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/gisChiaPet.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/gisRnaElements.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/gisRnaPet.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/haibChipSeq.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/haibCnv.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/haibMethyl450.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/haibMethylArray.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/haibMethylSeq.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/haibRnaSeq.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/licrMm9RnaSeq.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/rikenCageSolexa.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/rikenElements.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/stanfordHg19Hist.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/stanfordHg19Tfbs.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/stanfordMm9RnaSeq.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/sunyRipSeq.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/uChicagoTfbs.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/uncBsuProt.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/uncFaireSeq.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/utAustinChipSeq.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/uwChipSeq.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/uwDnaseDgf.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/uwDnaseSeq.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/uwExonArray.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/uwMm9RnaSeq.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/uwRepliSeq.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/uwTfbs.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/wgEncodeHaibMethylRrbs.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/wgEncodeSunySwitchgear.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/2.0/ydhrRnaSeq.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/3.0/hg19/wgEncodeBroadHistone.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/3.0/hg19/wgEncodeBuOrchid.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/3.0/hg19/wgEncodeCaltechRnaSeq.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/3.0/hg19/wgEncodeCshlLongRnaSeq.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/3.0/hg19/wgEncodeCshlShortRnaSeq.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
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• src/hg/encode/DAFs/3.0/hg19/wgEncodeFsuRepliChip.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
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• src/hg/encode/DAFs/3.0/hg19/wgEncodeGisChiaPet.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
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• src/hg/encode/DAFs/3.0/hg19/wgEncodeGisRnaPet.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
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• src/hg/encode/DAFs/3.0/hg19/wgEncodeHaibGenotype.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
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• src/hg/encode/DAFs/3.0/hg19/wgEncodeHaibMethyl27.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
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• src/hg/encode/DAFs/3.0/hg19/wgEncodeHaibMethyl450.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/3.0/hg19/wgEncodeHaibMethylRrbs.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
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• src/hg/encode/DAFs/3.0/hg19/wgEncodeHaibMethylWgbs.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/3.0/hg19/wgEncodeHaibRnaSeq.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
    changing the last dregs of cse to soe
• src/hg/encode/DAFs/3.0/hg19/wgEncodeHaibTfbs.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
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• src/hg/encode/DAFs/3.0/hg19/wgEncodeOpenChromChip.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
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• src/hg/encode/DAFs/3.0/hg19/wgEncodeOpenChromDnase.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
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• src/hg/encode/DAFs/3.0/hg19/wgEncodeOpenChromFaire.daf
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• src/hg/encode/DAFs/3.0/hg19/wgEncodeRikenCage.daf
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• src/hg/encode/DAFs/3.0/hg19/wgEncodeSunyRipSeq.daf
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    772a117bb6e4769f4c3c1b6eca99cf9c78e31d19 Mon Aug 27 15:24:50 2018 -0700
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• src/hg/encode/DAFs/3.0/hg19/wgEncodeSunySwitchgear.daf
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• src/hg/encode/DAFs/3.0/hg19/wgEncodeSydhHistone.daf
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• src/hg/encode/DAFs/3.0/hg19/wgEncodeSydhTfbs.daf
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• src/hg/encode/DAFs/3.0/hg19/wgEncodeUchicagoTfbs.daf
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• src/hg/encode/DAFs/3.0/hg19/wgEncodeUncBsuProt.daf
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• src/hg/encode/DAFs/3.0/hg19/wgEncodeUwRepliSeq.daf
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    3b48412a1e8b3124093c30330c3730e4e4522ca0 Sun Sep 2 13:01:35 2018 -0700
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    3b48412a1e8b3124093c30330c3730e4e4522ca0 Sun Sep 2 13:01:35 2018 -0700
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    37d3ce105cbc50cec60836f02057c359b88b6fd5 Sat Sep 1 14:43:23 2018 -0700
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    b6f07a94d29822a39d05d776cedd315431869c89 Tue Aug 28 14:35:18 2018 -0700
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    8d89f83e0a13fbf7a021d5156df5218ec08356d4 Tue Aug 28 16:30:50 2018 -0700
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    e4d33ed2bb42c55bb1feb138ae6c7f14f8a3551e Wed Aug 29 13:22:33 2018 -0700
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    30b757debdf941e21f479a4624667101d72cef42 Mon Aug 27 21:16:59 2018 -0700
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    3b48412a1e8b3124093c30330c3730e4e4522ca0 Sun Sep 2 13:01:35 2018 -0700
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    3b48412a1e8b3124093c30330c3730e4e4522ca0 Sun Sep 2 13:01:35 2018 -0700
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    1886d5d3eadf17bf15566b51b4e7ecffba0e87ee Mon Aug 27 15:52:08 2018 -0700
    Making it so that facets only show most popular 20 unless you expand them. Also when you expand they are sorted alphabetically rather than by popularity.
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    8d89f83e0a13fbf7a021d5156df5218ec08356d4 Tue Aug 28 16:30:50 2018 -0700
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    3b48412a1e8b3124093c30330c3730e4e4522ca0 Sun Sep 2 13:01:35 2018 -0700
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    3b48412a1e8b3124093c30330c3730e4e4522ca0 Sun Sep 2 13:01:35 2018 -0700
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    3b48412a1e8b3124093c30330c3730e4e4522ca0 Sun Sep 2 13:01:35 2018 -0700
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• src/hg/lib/botDelay.c
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    fd1cc3d768c63c4a8f1d4ace37712975dbfcdde1 Tue Aug 28 08:52:21 2018 -0700
    Adding more granular parsing errors for custom tracks with declared types. refs #21967
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    1886d5d3eadf17bf15566b51b4e7ecffba0e87ee Mon Aug 27 15:52:08 2018 -0700
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• src/hg/lib/hui.c
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• src/hg/lib/makefile
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• src/hg/lib/tablesTables.c
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• src/hg/liftOver/liftOver.c
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    be6fe9e15b29b963f5e32280821368f60c7957e2 Fri Aug 31 16:11:02 2018 -0700
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    575cd8df13a165f4b8e907d91117f6053a8b2ce2 Mon Aug 27 15:13:54 2018 -0700
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• src/hg/makeDb/doc/calJac1.txt
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• src/hg/makeDb/doc/cavPor3.txt
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• src/hg/makeDb/doc/encodeDccHg18/myers.txt
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• src/hg/makeDb/doc/encodeDccHg19/gencodeV10.txt
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• src/hg/makeDb/doc/encodeDccHg19/openChromCrawford.hg19.txt
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