Commits for hiram

v374_preview2 to v374_base (2018-11-05 to 2018-11-12) v374

abfb32782fdf69479add4c6425693aa6843da1e6 Tue Nov 6 12:00:49 2018 -0800

• beginning bosTau9 refs #22425
  • src/hg/makeDb/doc/bosTau9/initialBuild.txt - lines changed 993, context: html, text, full: html, text

520d57f838925d11fcf21da4b41eee5359ecc7f4 Tue Nov 6 13:23:46 2018 -0800

• adding bosTau9 to the build refs #22425
  • src/hg/makeDb/trackDb/cow/bosTau9/description.html - lines changed 64, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/bosTau9/gap.html - lines changed 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/bosTau9/gold.html - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/bosTau9/trackDb.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text

2b9cfcbece1a18da8d98c50a5d39483035590d6e Tue Nov 6 15:28:03 2018 -0800

• add assembly/gold table search rule refs #22425
  • src/hg/makeDb/trackDb/cow/bosTau9/trackDb.ra - lines changed 6, context: html, text, full: html, text

aeb72ec96ea4bd581db5f9bc2ce68863aadee06b Tue Nov 6 15:44:29 2018 -0800

• running repeat masker refs #22425
  • src/hg/makeDb/doc/bosTau9/initialBuild.txt - lines changed 162, context: html, text, full: html, text

e9aebd4215542bcbda89eb0b114d0516488ed945 Thu Nov 8 10:38:41 2018 -0800

• starting mm10 vs. bosTau9 lastz chainNet refs #22425
  • src/hg/makeDb/doc/mm10.txt - lines changed 76, context: html, text, full: html, text

f67ecd77604d1cbf071bb1e598efb9d634652ce7 Thu Nov 8 11:16:41 2018 -0800

• adding mm10 strains1 ext and seq file table rules refs #20280
  • src/hg/makeDb/schema/all.joiner - lines changed 5, context: html, text, full: html, text

85af5b05fba85ff364442b39139f4592f5862932 Thu Nov 8 11:50:41 2018 -0800

• adding bosTau9 rules refs #22425
  • src/hg/makeDb/schema/all.joiner - lines changed 9, context: html, text, full: html, text

f0c97e8e3eb888112e3ad6287dbbfe04ef11fb62 Thu Nov 8 12:55:40 2018 -0800

• indicate no gaps and hid the gap track refs #22425
  • src/hg/makeDb/trackDb/cow/bosTau9/gap.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/bosTau9/trackDb.ra - lines changed 2, context: html, text, full: html, text

0c13306bc9defeac3d959a73c2942e41cf6a6014 Thu Nov 8 13:02:46 2018 -0800

• properly indicate no gaps refs #22425
  • src/hg/utils/automation/makeGenomeDb.pl - lines changed 12, context: html, text, full: html, text

82f255866510c66e9936acca6bd47e5a6ec8f725 Thu Nov 8 13:32:27 2018 -0800

• adding bosTau9 refs #22425
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 3, context: html, text, full: html, text

7c9234b9239a9c8223b7b82ee176fa16fca41b95 Thu Nov 8 13:35:40 2018 -0800

• genbank set up running hg38 mm10 lastz chain net refs #22425
  • src/hg/makeDb/doc/bosTau9/initialBuild.txt - lines changed 251, context: html, text, full: html, text

9272a6a9b7fe172e30d39dc9a3a4311f629f7220 Fri Nov 9 11:40:14 2018 -0800

• adding bosTau9 refs #22425
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 22, context: html, text, full: html, text

4c34bd001dc210b27e71e8b6075fa22c64286538 Sun Nov 11 13:25:24 2018 -0800

• almost done with bosTau9 lastz chainNet refs #22425
  • src/hg/makeDb/doc/mm10.txt - lines changed 12, context: html, text, full: html, text

5c47f34eb9751e62455c711c73952bc90878b34e Sun Nov 11 13:31:13 2018 -0800

• crispr 10K run done on hg19 refs #21987
  • src/hg/makeDb/doc/hg19.txt - lines changed 9, context: html, text, full: html, text

75ea5687d7991a8db97bdce360b2887684ecc937 Mon Nov 12 09:15:06 2018 -0800

• done with hg38 lastz chainNet refs #22425
  • src/hg/makeDb/doc/mm10.txt - lines changed 3, context: html, text, full: html, text

ca74493524f26c4dc389d376b6ad36940004a8a4 Mon Nov 12 10:01:25 2018 -0800

• v374 final build, refs #22357
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text

94ca49469aa9a2c7eb6d58ce0ca45eaa3289db2c Mon Nov 12 10:02:08 2018 -0800

• New version number v374
  • src/hg/inc/versionInfo.h - lines changed 1, context: html, text, full: html, text
  • src/inc/srcVersion.h - lines changed 1, context: html, text, full: html, text