All File Changes

v376_base to v377_preview (2019-01-14 to 2019-01-21) v377

• src/hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c
  • lines changed 1, context: html, text, full: html, text
    844db8a1944d1fbe0171da2571ff15c7970d492f Tue Jan 15 02:41:55 2019 -0800
    fixing genome browser links for new cirm01 mandatory https setup
• src/hg/cirm/cdw/lib/cdwPageFooter.h
  • lines changed 6, context: html, text, full: html, text
    5cfe8a8c0b3d2cf066bf5b364f0d9c888a7d944c Fri Jan 18 15:10:04 2019 -0800
    Updating header to include new menu bar based on nav class. Updating footer to remove FAQ link.
• src/hg/cirm/cdw/lib/cdwPageHeader.h
  • lines changed 4, context: html, text, full: html, text
    cad4225ed2f32e3bc669984b78a89676cd9d275d Thu Jan 17 10:27:15 2019 -0800
    Fixes for CIRM secure banner, refs #22790, #22791
  • lines changed 61, context: html, text, full: html, text
    5cfe8a8c0b3d2cf066bf5b364f0d9c888a7d944c Fri Jan 18 15:10:04 2019 -0800
    Updating header to include new menu bar based on nav class. Updating footer to remove FAQ link.
• src/hg/cirm/gateway/htdocs/cescg/cescgOrg.html
  • lines changed 187, context: html, text, full: html, text
    2a5452c6020c03fc7341ab4db422eee7dc01a5ad Mon Jan 14 14:13:37 2019 -0800
    Major rework of the site to take advantage of Bootstrap 4 functionality. All pages had at least some changes made to take advantage of this. People and tools pages changed to take advantage of cards. Help and pubs pages changed to take advantage of list-group-flush class. Moved some text from index to cescgOrg page to make home page less wordy. Removed FAQ link from footer as page wasn't that useful. Other random spelling corrections. refs #22753
• src/hg/cirm/gateway/htdocs/cescg/cescgPeople.html
  • lines changed 916, context: html, text, full: html, text
    2a5452c6020c03fc7341ab4db422eee7dc01a5ad Mon Jan 14 14:13:37 2019 -0800
    Major rework of the site to take advantage of Bootstrap 4 functionality. All pages had at least some changes made to take advantage of this. People and tools pages changed to take advantage of cards. Help and pubs pages changed to take advantage of list-group-flush class. Moved some text from index to cescgOrg page to make home page less wordy. Removed FAQ link from footer as page wasn't that useful. Other random spelling corrections. refs #22753
  • lines changed 18, context: html, text, full: html, text
    56ebc276fbfc2d00e12b6c961f552fcb42dd9a4d Thu Jan 17 11:37:03 2019 -0800
    Correcting name misspelling. Changing picture heights so that images look better on small screen sizes. refs #22797
• src/hg/cirm/gateway/htdocs/cescg/cescgPubs.html
  • lines changed 200, context: html, text, full: html, text
    2a5452c6020c03fc7341ab4db422eee7dc01a5ad Mon Jan 14 14:13:37 2019 -0800
    Major rework of the site to take advantage of Bootstrap 4 functionality. All pages had at least some changes made to take advantage of this. People and tools pages changed to take advantage of cards. Help and pubs pages changed to take advantage of list-group-flush class. Moved some text from index to cescgOrg page to make home page less wordy. Removed FAQ link from footer as page wasn't that useful. Other random spelling corrections. refs #22753
• src/hg/cirm/gateway/htdocs/help/cirmBasics.html
  • lines changed 40, context: html, text, full: html, text
    2a5452c6020c03fc7341ab4db422eee7dc01a5ad Mon Jan 14 14:13:37 2019 -0800
    Major rework of the site to take advantage of Bootstrap 4 functionality. All pages had at least some changes made to take advantage of this. People and tools pages changed to take advantage of cards. Help and pubs pages changed to take advantage of list-group-flush class. Moved some text from index to cescgOrg page to make home page less wordy. Removed FAQ link from footer as page wasn't that useful. Other random spelling corrections. refs #22753
• src/hg/cirm/gateway/htdocs/images/misce1.png
  • lines changed 0, context: html, text, full: html, text
    2a5452c6020c03fc7341ab4db422eee7dc01a5ad Mon Jan 14 14:13:37 2019 -0800
    Major rework of the site to take advantage of Bootstrap 4 functionality. All pages had at least some changes made to take advantage of this. People and tools pages changed to take advantage of cards. Help and pubs pages changed to take advantage of list-group-flush class. Moved some text from index to cescgOrg page to make home page less wordy. Removed FAQ link from footer as page wasn't that useful. Other random spelling corrections. refs #22753
• src/hg/cirm/gateway/htdocs/images/pluritestWelcome.png
  • lines changed 0, context: html, text, full: html, text
    2a5452c6020c03fc7341ab4db422eee7dc01a5ad Mon Jan 14 14:13:37 2019 -0800
    Major rework of the site to take advantage of Bootstrap 4 functionality. All pages had at least some changes made to take advantage of this. People and tools pages changed to take advantage of cards. Help and pubs pages changed to take advantage of list-group-flush class. Moved some text from index to cescgOrg page to make home page less wordy. Removed FAQ link from footer as page wasn't that useful. Other random spelling corrections. refs #22753
• src/hg/cirm/gateway/htdocs/images/tagStormImage.png
  • lines changed 0, context: html, text, full: html, text
    2a5452c6020c03fc7341ab4db422eee7dc01a5ad Mon Jan 14 14:13:37 2019 -0800
    Major rework of the site to take advantage of Bootstrap 4 functionality. All pages had at least some changes made to take advantage of this. People and tools pages changed to take advantage of cards. Help and pubs pages changed to take advantage of list-group-flush class. Moved some text from index to cescgOrg page to make home page less wordy. Removed FAQ link from footer as page wasn't that useful. Other random spelling corrections. refs #22753
• src/hg/cirm/gateway/htdocs/inc/footer.html
  • lines changed 34, context: html, text, full: html, text
    2a5452c6020c03fc7341ab4db422eee7dc01a5ad Mon Jan 14 14:13:37 2019 -0800
    Major rework of the site to take advantage of Bootstrap 4 functionality. All pages had at least some changes made to take advantage of this. People and tools pages changed to take advantage of cards. Help and pubs pages changed to take advantage of list-group-flush class. Moved some text from index to cescgOrg page to make home page less wordy. Removed FAQ link from footer as page wasn't that useful. Other random spelling corrections. refs #22753
• src/hg/cirm/gateway/htdocs/inc/header.html
  • lines changed 37, context: html, text, full: html, text
    2a5452c6020c03fc7341ab4db422eee7dc01a5ad Mon Jan 14 14:13:37 2019 -0800
    Major rework of the site to take advantage of Bootstrap 4 functionality. All pages had at least some changes made to take advantage of this. People and tools pages changed to take advantage of cards. Help and pubs pages changed to take advantage of list-group-flush class. Moved some text from index to cescgOrg page to make home page less wordy. Removed FAQ link from footer as page wasn't that useful. Other random spelling corrections. refs #22753
  • lines changed 69, context: html, text, full: html, text
    51947bce59d159033b20f8933326b6a3d27116a0 Fri Jan 18 15:07:53 2019 -0800
    Changing menubar to use nav class so that we can easily make dropdown menus. Added a few classes to make formatting of some elements easier.
• src/hg/cirm/gateway/htdocs/index.html
  • lines changed 57, context: html, text, full: html, text
    2a5452c6020c03fc7341ab4db422eee7dc01a5ad Mon Jan 14 14:13:37 2019 -0800
    Major rework of the site to take advantage of Bootstrap 4 functionality. All pages had at least some changes made to take advantage of this. People and tools pages changed to take advantage of cards. Help and pubs pages changed to take advantage of list-group-flush class. Moved some text from index to cescgOrg page to make home page less wordy. Removed FAQ link from footer as page wasn't that useful. Other random spelling corrections. refs #22753
• src/hg/cirm/gateway/htdocs/projects.html
  • lines changed 3, context: html, text, full: html, text
    2a5452c6020c03fc7341ab4db422eee7dc01a5ad Mon Jan 14 14:13:37 2019 -0800
    Major rework of the site to take advantage of Bootstrap 4 functionality. All pages had at least some changes made to take advantage of this. People and tools pages changed to take advantage of cards. Help and pubs pages changed to take advantage of list-group-flush class. Moved some text from index to cescgOrg page to make home page less wordy. Removed FAQ link from footer as page wasn't that useful. Other random spelling corrections. refs #22753
• src/hg/cirm/gateway/htdocs/style/cirmStyle.css
  • lines changed 34, context: html, text, full: html, text
    2a5452c6020c03fc7341ab4db422eee7dc01a5ad Mon Jan 14 14:13:37 2019 -0800
    Major rework of the site to take advantage of Bootstrap 4 functionality. All pages had at least some changes made to take advantage of this. People and tools pages changed to take advantage of cards. Help and pubs pages changed to take advantage of list-group-flush class. Moved some text from index to cescgOrg page to make home page less wordy. Removed FAQ link from footer as page wasn't that useful. Other random spelling corrections. refs #22753
  • lines changed 2, context: html, text, full: html, text
    cad4225ed2f32e3bc669984b78a89676cd9d275d Thu Jan 17 10:27:15 2019 -0800
    Fixes for CIRM secure banner, refs #22790, #22791
  • lines changed 12, context: html, text, full: html, text
    51947bce59d159033b20f8933326b6a3d27116a0 Fri Jan 18 15:07:53 2019 -0800
    Changing menubar to use nav class so that we can easily make dropdown menus. Added a few classes to make formatting of some elements easier.
• src/hg/cirm/gateway/htdocs/tools.html
  • lines changed 329, context: html, text, full: html, text
    2a5452c6020c03fc7341ab4db422eee7dc01a5ad Mon Jan 14 14:13:37 2019 -0800
    Major rework of the site to take advantage of Bootstrap 4 functionality. All pages had at least some changes made to take advantage of this. People and tools pages changed to take advantage of cards. Help and pubs pages changed to take advantage of list-group-flush class. Moved some text from index to cescgOrg page to make home page less wordy. Removed FAQ link from footer as page wasn't that useful. Other random spelling corrections. refs #22753
• src/hg/hgGene/hgGeneData/Human/links.ra
  • lines changed 1, context: html, text, full: html, text
    080656d5691334e8a5f0b493ba9247cdc59c348b Fri Jan 18 16:27:23 2019 -0800
    updating HGNC link for humans, refs #15342
• src/hg/hgTables/mainPage.c
  • lines changed 6, context: html, text, full: html, text
    6e5470686630fa07acaf64211c0b79bcb137771b Mon Jan 14 15:40:58 2019 -0800
    Position radio button was not remaining selected when a search had taken place, refs #21954
• src/hg/hgTables/userRegions.c
  • lines changed 1, context: html, text, full: html, text
    c49908e3df61eaad9dc356a0e8e17e4547a323a9 Wed Jan 16 15:03:56 2019 -0800
    After processing an uploaded file of user regions, remove its contents from the cart. Users have uploaded some very large files as identifier lists.
• src/hg/hgTracks/extTools.ra
  • lines changed 12, context: html, text, full: html, text
    85941145096c0d307d4a23711446dd3659053d5f Thu Jan 17 02:12:44 2019 -0800
    fixing mm9 ensembl links, refs #22743
• src/hg/hgTracks/menu.c
  • lines changed 6, context: html, text, full: html, text
    70ac37ee2a1983b0f202c3727ff36c4e460751af Mon Dec 17 19:46:44 2018 -0800
    Add Projects drop-down to top bar on static pages and gateway. refs #22679
• src/hg/hgc/lowelab.c
  • lines changed 1, context: html, text, full: html, text
    1a112d241dfe176a9958648ecf192f18ff419b4b Fri Jan 18 19:33:08 2019 -0800
    revert most recent change for further review refs #22774
• src/hg/htdocs/FAQ/FAQdownloads.html
  • lines changed 18, context: html, text, full: html, text
    bc0e47e626d6f56f9450548ac36e5a74d316e307 Thu Jan 17 16:48:21 2019 -0800
    Fixing some wording on FAQ ref#22789
  • lines changed 5, context: html, text, full: html, text
    ee9ff849ea5e14f74d76ac7e8addf3466bcd1b6c Fri Jan 18 15:48:29 2019 -0800
    Fixing chr_alt and adding chr_fix to FAQ ref#22789
• src/hg/htdocs/FAQ/FAQgenes.html
  • lines changed 3, context: html, text, full: html, text
    8248e1d136a5016bbf51e5f493b251810e0617c4 Tue Jan 15 09:40:40 2019 -0800
    Added hyperlinks to FAQgenes.html for code review #22773
• src/hg/htdocs/goldenPath/help/customTrackText.html
  • lines changed 2, context: html, text, full: html, text
    48e50a677862ec54000bee6678537fde24dbf45c Tue Jan 15 09:44:19 2019 -0800
    Removed duplicate word, added comma, removed unneccessary word for code review #22773
• src/hg/htdocs/goldenPath/help/gbic.html
  • lines changed 18, context: html, text, full: html, text
    a36a841efef188acf6f2f91c0fb45d83fcd79cd5 Thu Jan 17 14:46:16 2019 -0800
    Adding network requirements for GBiC ref#22784
• src/hg/htdocs/gtex.html
  • lines changed 2, context: html, text, full: html, text
    726616315ff16be772dae2b7c7edcdc29aeeba2d Wed Dec 19 10:52:47 2018 -0800
    Improve images. refs #22678
• src/hg/htdocs/inc/globalNavBar.inc
  • lines changed 9, context: html, text, full: html, text
    70ac37ee2a1983b0f202c3727ff36c4e460751af Mon Dec 17 19:46:44 2018 -0800
    Add Projects drop-down to top bar on static pages and gateway. refs #22679
• src/hg/htdocs/training/index.html
  • lines changed 16, context: html, text, full: html, text
    df08663595fb30648a6976ccddcffbc79af41088 Sun Jan 20 10:15:53 2019 -0800
    removed completed PAG workshop, moving Hudson Alpha into detail section
• src/hg/hubApi/hubApi.c
  • lines changed 135, context: html, text, full: html, text
    3780663c60d09f782fe8d0a84002dcc1ca7a464b Fri Jan 18 15:19:22 2019 -0800
    initial experiment to see if hub structures can be found and examined refs #18869
• src/hg/hubApi/makefile
  • lines changed 18, context: html, text, full: html, text
    3780663c60d09f782fe8d0a84002dcc1ca7a464b Fri Jan 18 15:19:22 2019 -0800
    initial experiment to see if hub structures can be found and examined refs #18869
• src/hg/inc/liftOver.h
  • lines changed 1, context: html, text, full: html, text
    5b83a4f3758e71c48c76f3235f7a1924c21b4ae2 Tue Jan 15 13:21:18 2019 -0800
    Implement liftOver -multiple -genePred; update gtexGeneModel with all the alts/patches. refs #18855
• src/hg/lib/liftOver.c
  • lines changed 22, context: html, text, full: html, text
    5b83a4f3758e71c48c76f3235f7a1924c21b4ae2 Tue Jan 15 13:21:18 2019 -0800
    Implement liftOver -multiple -genePred; update gtexGeneModel with all the alts/patches. refs #18855
• src/hg/liftOver/liftOver.c
  • lines changed 15, context: html, text, full: html, text
    355d302871339c7103597454b674aba7fc9e4f4c Tue Jan 15 12:29:35 2019 -0800
    Oops, liftOver -genePred support for -multiple was not implemented -- but there was no error message about that. Add error message for now, then add -multiple support later. refs #18855
  • lines changed 9, context: html, text, full: html, text
    5b83a4f3758e71c48c76f3235f7a1924c21b4ae2 Tue Jan 15 13:21:18 2019 -0800
    Implement liftOver -multiple -genePred; update gtexGeneModel with all the alts/patches. refs #18855
• src/hg/makeDb/doc/equCab3/initialBuild.txt
  • lines changed 15, context: html, text, full: html, text
    106e6128a61176495e8ddd3f13b3862fd3f6d587 Wed Jan 16 13:12:13 2019 -0800
    adding ensembl names to chromAlias for v95 release refs #22425
• src/hg/makeDb/doc/felCat9/initialBuild.txt
  • lines changed 25, context: html, text, full: html, text
    c12ab64bd4bbefaff15dc6de28a4dbc583da29f5 Wed Jan 16 13:16:18 2019 -0800
    adding ensembl names to chromAlias for v95 release refs #22425
• src/hg/makeDb/doc/fr3.txt
  • lines changed 52, context: html, text, full: html, text
    4421fc450b5adaaff65e6355fef5313ce915449f Wed Jan 16 13:36:19 2019 -0800
    adding ensembl names to chromAlias for v95 release and fix chrM name for genbank/INSDC refs #22425
• src/hg/makeDb/doc/galGal6/initialBuild.txt
  • lines changed 16, context: html, text, full: html, text
    9c0b0c5645ae6a5f1a3f4fc15817b04251bce1d8 Wed Jan 16 13:44:58 2019 -0800
    adding ensembl names to chromAlias for v95 release refs #22425
• src/hg/makeDb/doc/geneHancer.txt
  • lines changed 33, context: html, text, full: html, text
    1d706733ee9a1a9d6123ab436019be29332a22d8 Tue Jan 15 13:33:22 2019 -0800
    Tweaks to trackDb for data correction of GeneHancer track. refs #22712
• src/hg/makeDb/doc/grcH37P13.txt
  • lines changed 300, context: html, text, full: html, text
    15583bcb1652d3ca3dab7d1a96c21e2c3c133613 Tue Jan 15 09:53:14 2019 -0800
    Adding makeDb/doc files for hg19 and hg38 patch updates. refs #18853
• src/hg/makeDb/doc/grcHhh38/grcH38P11.txt
  • lines changed 475, context: html, text, full: html, text
    15583bcb1652d3ca3dab7d1a96c21e2c3c133613 Tue Jan 15 09:53:14 2019 -0800
    Adding makeDb/doc files for hg19 and hg38 patch updates. refs #18853
• src/hg/makeDb/doc/grcHhh38/grcH38P12.txt
  • lines changed 385, context: html, text, full: html, text
    15583bcb1652d3ca3dab7d1a96c21e2c3c133613 Tue Jan 15 09:53:14 2019 -0800
    Adding makeDb/doc files for hg19 and hg38 patch updates. refs #18853
• src/hg/makeDb/doc/hg19.patchUpdate.13.txt
  • lines changed 715, context: html, text, full: html, text
    15583bcb1652d3ca3dab7d1a96c21e2c3c133613 Tue Jan 15 09:53:14 2019 -0800
    Adding makeDb/doc files for hg19 and hg38 patch updates. refs #18853
  • lines changed 1, context: html, text, full: html, text
    355d302871339c7103597454b674aba7fc9e4f4c Tue Jan 15 12:29:35 2019 -0800
    Oops, liftOver -genePred support for -multiple was not implemented -- but there was no error message about that. Add error message for now, then add -multiple support later. refs #18855
  • lines changed 3, context: html, text, full: html, text
    5b83a4f3758e71c48c76f3235f7a1924c21b4ae2 Tue Jan 15 13:21:18 2019 -0800
    Implement liftOver -multiple -genePred; update gtexGeneModel with all the alts/patches. refs #18855
• src/hg/makeDb/doc/hg19.scanAssemblyReport.pl
  • lines changed 120, context: html, text, full: html, text
    15583bcb1652d3ca3dab7d1a96c21e2c3c133613 Tue Jan 15 09:53:14 2019 -0800
    Adding makeDb/doc files for hg19 and hg38 patch updates. refs #18853
• src/hg/makeDb/doc/hg38/grcH38P11.txt
  • lines changed 475, context: html, text, full: html, text
    15583bcb1652d3ca3dab7d1a96c21e2c3c133613 Tue Jan 15 09:53:14 2019 -0800
    Adding makeDb/doc files for hg19 and hg38 patch updates. refs #18853
• src/hg/makeDb/doc/hg38/grcH38P12.txt
  • lines changed 385, context: html, text, full: html, text
    15583bcb1652d3ca3dab7d1a96c21e2c3c133613 Tue Jan 15 09:53:14 2019 -0800
    Adding makeDb/doc files for hg19 and hg38 patch updates. refs #18853
• src/hg/makeDb/doc/hg38/patchUpdate.11.txt
  • lines changed 578, context: html, text, full: html, text
    15583bcb1652d3ca3dab7d1a96c21e2c3c133613 Tue Jan 15 09:53:14 2019 -0800
    Adding makeDb/doc files for hg19 and hg38 patch updates. refs #18853
  • lines changed 1, context: html, text, full: html, text
    355d302871339c7103597454b674aba7fc9e4f4c Tue Jan 15 12:29:35 2019 -0800
    Oops, liftOver -genePred support for -multiple was not implemented -- but there was no error message about that. Add error message for now, then add -multiple support later. refs #18855
  • lines changed 6, context: html, text, full: html, text
    5b83a4f3758e71c48c76f3235f7a1924c21b4ae2 Tue Jan 15 13:21:18 2019 -0800
    Implement liftOver -multiple -genePred; update gtexGeneModel with all the alts/patches. refs #18855
• src/hg/makeDb/doc/hg38/patchUpdate.12.txt
  • lines changed 634, context: html, text, full: html, text
    15583bcb1652d3ca3dab7d1a96c21e2c3c133613 Tue Jan 15 09:53:14 2019 -0800
    Adding makeDb/doc files for hg19 and hg38 patch updates. refs #18853
  • lines changed 1, context: html, text, full: html, text
    355d302871339c7103597454b674aba7fc9e4f4c Tue Jan 15 12:29:35 2019 -0800
    Oops, liftOver -genePred support for -multiple was not implemented -- but there was no error message about that. Add error message for now, then add -multiple support later. refs #18855
  • lines changed 3, context: html, text, full: html, text
    5b83a4f3758e71c48c76f3235f7a1924c21b4ae2 Tue Jan 15 13:21:18 2019 -0800
    Implement liftOver -multiple -genePred; update gtexGeneModel with all the alts/patches. refs #18855
• src/hg/makeDb/doc/makeEnsembl.txt
  • lines changed 287, context: html, text, full: html, text
    bdad28edfe7c905ec4c4a038ede65668fd3e0789 Thu Jan 17 14:07:13 2019 -0800
    add notes for v95 release refs #22761
• src/hg/makeDb/doc/mm10.txt
  • lines changed 16, context: html, text, full: html, text
    6a88765bb62c0b80a2e0330defb5e70364e1d866 Thu Jan 17 06:29:57 2019 -0800
    tabula muris docs, refs #21811
• src/hg/makeDb/genbank/etc/build-genbank
  • lines changed 21, context: html, text, full: html, text
    fc418df2ea716337e398e03e9bcb736ac883735e Thu Jan 17 13:48:52 2019 -0800
    more genbank fixes
• src/hg/makeDb/genbank/etc/copyAssemblies.sh
  • lines changed 17, context: html, text, full: html, text
    e377393cdfe3991c6a6ff4c435bb3b236a74ac97 Thu Jan 17 08:08:27 2019 -0800
    a little helper script
  • lines changed 3, context: html, text, full: html, text
    fc418df2ea716337e398e03e9bcb736ac883735e Thu Jan 17 13:48:52 2019 -0800
    more genbank fixes
• src/hg/makeDb/genbank/etc/copyMetaDev.sh
  • lines changed 3, context: html, text, full: html, text
    fc418df2ea716337e398e03e9bcb736ac883735e Thu Jan 17 13:48:52 2019 -0800
    more genbank fixes
• src/hg/makeDb/genbank/etc/deleteLocks.sh
  • lines changed 11, context: html, text, full: html, text
    e377393cdfe3991c6a6ff4c435bb3b236a74ac97 Thu Jan 17 08:08:27 2019 -0800
    a little helper script
• src/hg/makeDb/genbank/etc/validateDb.sh
  • lines changed 58, context: html, text, full: html, text
    9d8ed26a04f0f5ee30f184644b9fa15433204d8b Mon Jan 14 15:01:27 2019 -0800
    add db validator to genbank pipeline
  • lines changed 3, context: html, text, full: html, text
    fc418df2ea716337e398e03e9bcb736ac883735e Thu Jan 17 13:48:52 2019 -0800
    more genbank fixes
• src/hg/makeDb/trackDb/bacteria/staAur2/aaCounts.ra
  • lines changed 1, context: html, text, full: html, text
    cf6f1b6a00597520c9aaee1341f7d6f73eb2936f Wed Jan 16 08:59:05 2019 -0800
    turn on scoreFilterByRange refs #19937
• src/hg/makeDb/trackDb/chicken/galGal6/trackDb.77way.ra
  • lines changed 1, context: html, text, full: html, text
    8cbdf6b0b074292af542d8a64f5fef9cca824b02 Tue Jan 15 13:38:17 2019 -0800
    Adding pennant icon for track release #22687
  • lines changed 4, context: html, text, full: html, text
    c88410061789edd530da7b850a1d7649f83fc9fe Thu Jan 17 17:02:33 2019 -0800
    Changing reptiles in bird category #22687
• src/hg/makeDb/trackDb/drosophila/dm6/cons124way.html
  • lines changed 4, context: html, text, full: html, text
    e4d71fe69356622eb43b42ed3cd23aa42403852c Wed Jan 16 12:51:27 2019 -0800
    updating trackDb for 124way.ra and 27way.ra, refs #22550
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    d5a07e74436846af2142f1f114c82d20cb5c3e56 Wed Jan 16 16:13:04 2019 -0800
    removing alpha, beta tags and adding section to cons124.html, refs #22550
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    7af1fe0ba4a77dd278d94911768f29ae720345cb Thu Jan 17 11:25:15 2019 -0800
    add note about kmer generated phylip phyloTree refs #18874
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    1a633068b42f68d27d34c9568a7407337baf88e8 Thu Jan 17 16:31:54 2019 -0800
    updating description page for cons124way.html, refs #22550
• src/hg/makeDb/trackDb/drosophila/dm6/trackDb.124way.ra
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    e4d71fe69356622eb43b42ed3cd23aa42403852c Wed Jan 16 12:51:27 2019 -0800
    updating trackDb for 124way.ra and 27way.ra, refs #22550
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    468d3638837d209745e0cc04d57841f6c842d37a Wed Jan 16 14:59:50 2019 -0800
    updating icon release date for trackDb.124way.ra, refs #22550
• src/hg/makeDb/trackDb/drosophila/dm6/trackDb.27way.ra
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    e4d71fe69356622eb43b42ed3cd23aa42403852c Wed Jan 16 12:51:27 2019 -0800
    updating trackDb for 124way.ra and 27way.ra, refs #22550
• src/hg/makeDb/trackDb/drosophila/dm6/trackDb.ra
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    e4d71fe69356622eb43b42ed3cd23aa42403852c Wed Jan 16 12:51:27 2019 -0800
    updating trackDb for 124way.ra and 27way.ra, refs #22550
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    d5a07e74436846af2142f1f114c82d20cb5c3e56 Wed Jan 16 16:13:04 2019 -0800
    removing alpha, beta tags and adding section to cons124.html, refs #22550
• src/hg/makeDb/trackDb/human/trackDb.geneHancer.ra
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    0de0b86d68a0ec7ed88c438dd4cf6bba0a251bd7 Fri Jan 18 13:47:14 2019 -0800
    Removing release tags from GH and removing all old stanzas rm#22712
• src/hg/makeDb/trackDb/mouse/mm10/TabulaMurisFacsDataset.html
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    66fffcac1cb1e5775a3e86b423917b958eef7d16 Tue Jan 15 02:21:57 2019 -0800
    fixes after code review, refs #22776
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.tabulamuris.ra
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    66fffcac1cb1e5775a3e86b423917b958eef7d16 Tue Jan 15 02:21:57 2019 -0800
    fixes after code review, refs #22776
• src/hg/makeDb/trackDb/orangutan/ponAbe2/multiz8way.html
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    bb6ebb202c98d8341811aa4863967f942e34e2e6 Tue Jan 15 09:42:15 2019 -0800
    Updating http to https for ponAbe3, uiLink cronjob
• src/hg/makeDb/trackDb/orangutan/ponAbe2/nscanGene.html
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    bb6ebb202c98d8341811aa4863967f942e34e2e6 Tue Jan 15 09:42:15 2019 -0800
    Updating http to https for ponAbe3, uiLink cronjob
• src/hg/makeDb/trackDb/orangutan/ponAbe2/phastConsElements8way.html
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    bb6ebb202c98d8341811aa4863967f942e34e2e6 Tue Jan 15 09:42:15 2019 -0800
    Updating http to https for ponAbe3, uiLink cronjob
• src/hg/makeDb/trackDb/sacCer/sacCer3/multiz7way.html
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    475d7b6ed2c16bb3cb75ebc0f2e7e882de953687 Thu Jan 17 16:52:07 2019 -0800
    Updating http to https for sacCer3, no Redmine.
• src/hg/makeDb/trackDb/worm/ce11/cons135way.html
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    30bd03cc50fe484b63f1c010d8cb0d3256d545a9 Thu Jan 17 16:47:32 2019 -0800
    Updating description page for cons track ref#22599
• src/hg/nci60/findStanAlignments.c
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    a33ebfc0cd07ff0df7dc721351ace0224a928796 Fri Jan 18 19:35:55 2019 -0800
    revert most recent change for further review refs #22774
• src/product/installer/README.md
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    82434fc84d55100ccd881fa1a1f261eb42432c39 Thu Jan 17 15:23:37 2019 -0800
    Adding network requirements for GBiC ref#22784
• src/utils/qa/weeklybld/buildEnv.csh
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    a51d7df14060b4c345bebd24e88f43d2e3b514ed Mon Jan 21 14:47:04 2019 -0800
    v377 preview1, refs #22774
• src/utils/qa/weeklybld/summaryEmail.sh
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    0d06e40e9e79ec541bc0c2cf3aeb6de6abf7ff5e Tue Jan 15 08:35:09 2019 -0800
    change Brian to Ann no redmine

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