Commits for kate

v380_preview2 to v380_base (2019-04-01 to 2019-04-08) v380

f464e85e868ff6c5ef8d97c24cb990078a8fd723 Wed Apr 3 11:28:55 2019 -0700

• Tools for factorSource format. refs #21139
  • src/hg/makeDb/hgBedsToBedExps/bedExpsToFactorSource.pl - lines changed 46, context: html, text, full: html, text
  • src/hg/makeDb/hgBedsToBedExps/factorSourceCheckScore.pl - lines changed 26, context: html, text, full: html, text

d87e5f63bc000d560c21bca638b6d5f3dee0173d Wed Apr 3 12:06:45 2019 -0700

• Add scripts and make docs for ENCODE 3 TF binding site tracks. refs #21139
  • src/hg/makeDb/doc/encode3/tfbs.txt - lines changed 447, context: html, text, full: html, text
  • src/hg/makeDb/doc/encodeRegHg19.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/outside/encode3/tfbs/dac_dec2018/README.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/outside/encode3/tfbs/dac_dec2018/makeFilelist.pl - lines changed 31, context: html, text, full: html, text
  • src/hg/makeDb/outside/encode3/tfbs/dac_dec2018/makeInputs.pl - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/outside/encode3/tfbs/dac_dec2018/makeTrackDb.pl - lines changed 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encode3RegTfbsCluster.html - lines changed 140, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/encode3.ra - lines changed 8911, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/encode3.ra - lines changed 8862, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 1, context: html, text, full: html, text

ee7b1156b945e6a7768a20128926c13b9c18e040 Wed Apr 3 12:16:23 2019 -0700

• Add defaults (a few arbitrary) to composite. refs #23243
  • src/hg/makeDb/trackDb/human/hg38/encode3.ra - lines changed 5, context: html, text, full: html, text

88cf005fc7c756db47ade92f12d1a0a23b47e518 Wed Apr 3 12:25:35 2019 -0700

• Merge branch 'e3tfbs'

3f6f7810a3a55c96f40b38fee3e7574fe2d016c0 Wed Apr 3 14:45:50 2019 -0700

• Tweak laels and priorities. refs #21139
  • src/hg/makeDb/trackDb/human/hg19/encode3.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/encode3.ra - lines changed 7, context: html, text, full: html, text

702027afdbe700e69a3f553baf1e0341aad2bd27 Thu Apr 4 14:23:17 2019 -0700

• Fix handling of release tag (make tdbQuery -release=beta happy)
  • src/hg/makeDb/trackDb/human/hg19/encode3.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/encode3.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 1, context: html, text, full: html, text

ad7467196611835c90cc7eed12dbcf973fc6a7ae Thu Apr 4 14:26:49 2019 -0700

• Remove debug tracks. refs #21139
  • src/hg/makeDb/trackDb/human/hg19/encode3.ra - lines changed 474, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/encode3.ra - lines changed 473, context: html, text, full: html, text