All File Changes

v381_preview2 to v381_base (2019-04-22 to 2019-04-29) v381

• src/hg/cirm/gateway/js/cirmStuff.js
  • lines changed 16, context: html, text, full: html, text
    5e705ca6bff354acfa0252b9f3d2accd831e21e8 Thu Apr 25 15:38:34 2019 -0700
    adding googleAnalytics calls to CIRM
• src/hg/hgHubConnect/hgHubConnect.c
  • lines changed 9, context: html, text, full: html, text
    df10c2a997dd6578f49113d97109816d9eaaee03 Wed Apr 24 10:04:24 2019 -0700
    Adding checks for hub and genome description pages and fixing incorrect error message when composite/superTracks have no children, refs #18870
• src/hg/hgSession/sessionData.c
  • lines changed 7, context: html, text, full: html, text
    225e78ff3e56fece2df5cdbc1d6da5d444347ffe Thu Apr 25 12:23:34 2019 -0700
    Fixing loss of track collections caused by loss of newlines in hub file due to using lineFileNextReal instead of lineFileNext. refs #22440 note-43 Thx BrianL!
• src/hg/hgTracks/bigBedTrack.c
  • lines changed 3, context: html, text, full: html, text
    1231f270e5da6f5a817d887247b20e8f598b85d4 Fri Apr 26 10:03:24 2019 -0700
    bigBed text filters with an empty string should match everything
• src/hg/hgTracks/hgTracks.c
  • lines changed 1, context: html, text, full: html, text
    c3dafa814071aa2918bfb8a5f1cacb72b6495408 Mon Apr 22 17:14:04 2019 -0700
    doc for gdcCancer and a tweak to hgTracks
• src/hg/hgTracks/lolly.c
  • lines changed 288, context: html, text, full: html, text
    9dd986a7efee751199f4caa5d4b66dbabb479854 Mon Apr 29 08:23:01 2019 -0700
    clean up lollyTrack.c for "final" code review
• src/hg/hgTracks/lollyTrack.c
  • lines changed 308, context: html, text, full: html, text
    9dd986a7efee751199f4caa5d4b66dbabb479854 Mon Apr 29 08:23:01 2019 -0700
    clean up lollyTrack.c for "final" code review
• src/hg/hgTracks/makefile
  • lines changed 1, context: html, text, full: html, text
    9dd986a7efee751199f4caa5d4b66dbabb479854 Mon Apr 29 08:23:01 2019 -0700
    clean up lollyTrack.c for "final" code review
• src/hg/hgc/hgc.c
  • lines changed 4, context: html, text, full: html, text
    9716ae4bc04dbfbcb526f497f62d6ecab62516ee Wed Apr 24 10:40:00 2019 -0700
    For altSeqLiftOverPsl, don't show the 'view alt in context' or 'view corresponding range on alt' unless the alt is already in database. hg19 on beta/RR does not have patch updates, but does have altSeqLiftOverPsl and those links were broken. refs #18854 note-53
• src/hg/htdocs/FAQ/FAQlink.html
  • lines changed 82, context: html, text, full: html, text
    8702a72f40ba1b80df1e343f226db5d76184514c Fri Apr 26 17:21:45 2019 -0700
    Adding new URL info to this page #23131
• src/hg/htdocs/goldenPath/help/api.html
  • lines changed 4, context: html, text, full: html, text
    6dad1a9755a6be8fa84b9013b77b15ca81991e42 Thu Apr 25 15:36:29 2019 -0700
    Tweaks to api page ref#18869
  • lines changed 22, context: html, text, full: html, text
    438e3f1d32b858255405c7bb3fccb7190d06fca1 Sun Apr 28 13:12:25 2019 -0700
    eliminating the db= argument everywhere, only need genome= refs #18869
• src/hg/htdocs/goldenPath/help/bigGenePred.html
  • lines changed 14, context: html, text, full: html, text
    947a8b9ea2a461b1a92629306de66e995d557c32 Tue Apr 23 11:21:26 2019 -0700
    Finishing cut off sentence, adding code tags in Ex4 #23354
• src/hg/htdocs/goldenPath/help/hgTracksHelp.html
  • lines changed 13, context: html, text, full: html, text
    71a561c58c2fd847d4dc27a03821763a22f468c9 Tue Apr 23 14:17:53 2019 -0700
    Updating hgTracksHelp.html page with new images, refs #23285
  • lines changed 9, context: html, text, full: html, text
    db5870081aca0fe8846792bcc31fd7f05c942cf7 Thu Apr 25 14:06:00 2019 -0700
    adding images to hgTrackshelp.html, refs #23285
• src/hg/htdocs/goldenPath/help/hgVcfTrackHelp.html
  • lines changed 3, context: html, text, full: html, text
    6b1940d180706a84a5cdbf53dd59cff08a21d402 Mon Apr 22 17:00:26 2019 -0700
    Updating sentence in vcfHelp doc #22039
• src/hg/htdocs/goldenPath/help/hgWiggleTrackHelp.html
  • lines changed 58, context: html, text, full: html, text
    c2d89521bf18225fe182b52e75307aac96e1a9e9 Thu Apr 25 14:03:58 2019 -0700
    Adding images and updating hgWiggleTrackHelp.html, refs #23300
• src/hg/htdocs/images/dense14_800_gc29.png
  • lines changed 0, context: html, text, full: html, text
    71a561c58c2fd847d4dc27a03821763a22f468c9 Tue Apr 23 14:17:53 2019 -0700
    Updating hgTracksHelp.html page with new images, refs #23285
• src/hg/htdocs/images/full14_800_gc29-1.png
  • lines changed 0, context: html, text, full: html, text
    71a561c58c2fd847d4dc27a03821763a22f468c9 Tue Apr 23 14:17:53 2019 -0700
    Updating hgTracksHelp.html page with new images, refs #23285
• src/hg/htdocs/images/pack14_800_gc29-1.png
  • lines changed 0, context: html, text, full: html, text
    90a45654087978038883b4c7be79dc2917be0508 Tue Apr 23 14:28:01 2019 -0700
    adding pack image to hgTracksHelp.html, refs #23285
• src/hg/htdocs/images/squish14_800_gc29-1.png
  • lines changed 0, context: html, text, full: html, text
    71a561c58c2fd847d4dc27a03821763a22f468c9 Tue Apr 23 14:17:53 2019 -0700
    Updating hgTracksHelp.html page with new images, refs #23285
• src/hg/htdocs/images/wiggle_dense-1.png
  • lines changed 0, context: html, text, full: html, text
    c2d89521bf18225fe182b52e75307aac96e1a9e9 Thu Apr 25 14:03:58 2019 -0700
    Adding images and updating hgWiggleTrackHelp.html, refs #23300
• src/hg/htdocs/images/wiggle_full-1.png
  • lines changed 0, context: html, text, full: html, text
    c2d89521bf18225fe182b52e75307aac96e1a9e9 Thu Apr 25 14:03:58 2019 -0700
    Adding images and updating hgWiggleTrackHelp.html, refs #23300
• src/hg/htdocs/images/wiggle_pack-1.png
  • lines changed 0, context: html, text, full: html, text
    c2d89521bf18225fe182b52e75307aac96e1a9e9 Thu Apr 25 14:03:58 2019 -0700
    Adding images and updating hgWiggleTrackHelp.html, refs #23300
• src/hg/htdocs/images/wiggle_squish-1.png
  • lines changed 0, context: html, text, full: html, text
    c2d89521bf18225fe182b52e75307aac96e1a9e9 Thu Apr 25 14:03:58 2019 -0700
    Adding images and updating hgWiggleTrackHelp.html, refs #23300
• src/hg/hubApi/apiUtils.c
  • lines changed 33, context: html, text, full: html, text
    0042a4fea15ed7f06067f0b3a17761f1b37257da Fri Apr 26 22:53:23 2019 -0700
    correctly exit when specified genome is not found in hub for list/chromosomes function refs #18869
• src/hg/hubApi/dataApi.h
  • lines changed 4, context: html, text, full: html, text
    0042a4fea15ed7f06067f0b3a17761f1b37257da Fri Apr 26 22:53:23 2019 -0700
    correctly exit when specified genome is not found in hub for list/chromosomes function refs #18869
• src/hg/hubApi/getData.c
  • lines changed 15, context: html, text, full: html, text
    1fab075a58052c812dc69b9609cc987b400985cc Mon Apr 22 22:05:40 2019 -0700
    getting to api functions immediately no cart involved refs #18869
  • lines changed 8, context: html, text, full: html, text
    0042a4fea15ed7f06067f0b3a17761f1b37257da Fri Apr 26 22:53:23 2019 -0700
    correctly exit when specified genome is not found in hub for list/chromosomes function refs #18869
  • lines changed 12, context: html, text, full: html, text
    ec3a6524ca5074c26e5b0addc2310071259cc93b Sun Apr 28 09:42:45 2019 -0700
    eliminating the db= argument everywhere, only need genome= refs #18869
  • lines changed 27, context: html, text, full: html, text
    0d892a1bae5000aa4b300d28da5d6c5b962ea223 Sun Apr 28 13:54:19 2019 -0700
    eliminating the db= argument everywhere, only need genome= refs #18869
  • lines changed 6, context: html, text, full: html, text
    237aadfe25a90021e4b6964cc952dedd08aa8d6e Mon Apr 29 10:04:47 2019 -0700
    correctly next wiggle data output with columns refs #18869
• src/hg/hubApi/hubApi.c
  • lines changed 2, context: html, text, full: html, text
    b7f2851a2b236b41577f053200a758ecb69939f4 Mon Apr 22 13:35:07 2019 -0700
    indicate the not supported track types refs #18869
  • lines changed 160, context: html, text, full: html, text
    1fab075a58052c812dc69b9609cc987b400985cc Mon Apr 22 22:05:40 2019 -0700
    getting to api functions immediately no cart involved refs #18869
  • lines changed 2, context: html, text, full: html, text
    b59186811f72d35ad84ffa2f7c5b9857199e2073 Tue Apr 23 13:04:13 2019 -0700
    clarify the no such command error, can not happen refs #18869
  • lines changed 11, context: html, text, full: html, text
    ec3a6524ca5074c26e5b0addc2310071259cc93b Sun Apr 28 09:42:45 2019 -0700
    eliminating the db= argument everywhere, only need genome= refs #18869
  • lines changed 2, context: html, text, full: html, text
    80d78123e5886eec703fd9f5390ab5909135e790 Sun Apr 28 15:02:37 2019 -0700
    now listing tracks in nested JSON hierarchy refs #18869
  • lines changed 1, context: html, text, full: html, text
    173bedec00c1cda823929bbcd9f2fdf8dabafe81 Sun Apr 28 15:10:36 2019 -0700
    page title now correctly Genome Browser API refs #18869
• src/hg/hubApi/list.c
  • lines changed 22, context: html, text, full: html, text
    d92ba8d3eb476aeeaaa7a52cf097bb8b3ba6ba46 Wed Apr 24 14:30:00 2019 -0700
    all errors checked in list function refs #18869
  • lines changed 9, context: html, text, full: html, text
    0042a4fea15ed7f06067f0b3a17761f1b37257da Fri Apr 26 22:53:23 2019 -0700
    correctly exit when specified genome is not found in hub for list/chromosomes function refs #18869
  • lines changed 14, context: html, text, full: html, text
    ec3a6524ca5074c26e5b0addc2310071259cc93b Sun Apr 28 09:42:45 2019 -0700
    eliminating the db= argument everywhere, only need genome= refs #18869
  • lines changed 15, context: html, text, full: html, text
    0d892a1bae5000aa4b300d28da5d6c5b962ea223 Sun Apr 28 13:54:19 2019 -0700
    eliminating the db= argument everywhere, only need genome= refs #18869
  • lines changed 57, context: html, text, full: html, text
    80d78123e5886eec703fd9f5390ab5909135e790 Sun Apr 28 15:02:37 2019 -0700
    now listing tracks in nested JSON hierarchy refs #18869
• src/hg/hubApi/tests/expected/err01.gz
  • lines changed 0, context: html, text, full: html, text
    56b3f3c3405aa741906781abc2a65062911f7c10 Tue Apr 23 11:08:48 2019 -0700
    naming tests per their category refs #18869
• src/hg/hubApi/tests/expected/err02.gz
  • lines changed 0, context: html, text, full: html, text
    56b3f3c3405aa741906781abc2a65062911f7c10 Tue Apr 23 11:08:48 2019 -0700
    naming tests per their category refs #18869
• src/hg/hubApi/tests/expected/err03.gz
  • lines changed 0, context: html, text, full: html, text
    56b3f3c3405aa741906781abc2a65062911f7c10 Tue Apr 23 11:08:48 2019 -0700
    naming tests per their category refs #18869
• src/hg/hubApi/tests/expected/err04.gz
  • lines changed 0, context: html, text, full: html, text
    56b3f3c3405aa741906781abc2a65062911f7c10 Tue Apr 23 11:08:48 2019 -0700
    naming tests per their category refs #18869
• src/hg/hubApi/tests/expected/err05.gz
  • lines changed 0, context: html, text, full: html, text
    56b3f3c3405aa741906781abc2a65062911f7c10 Tue Apr 23 11:08:48 2019 -0700
    naming tests per their category refs #18869
• src/hg/hubApi/tests/expected/err06.gz
  • lines changed 0, context: html, text, full: html, text
    56b3f3c3405aa741906781abc2a65062911f7c10 Tue Apr 23 11:08:48 2019 -0700
    naming tests per their category refs #18869
  • lines changed 0, context: html, text, full: html, text
    3ac56bc62209675886a50cc7b6e3aef8ba6702c2 Sun Apr 28 12:56:25 2019 -0700
    eliminating the db= argument everywhere, only need genome= refs #18869
• src/hg/hubApi/tests/expected/err07.gz
  • lines changed 0, context: html, text, full: html, text
    56b3f3c3405aa741906781abc2a65062911f7c10 Tue Apr 23 11:08:48 2019 -0700
    naming tests per their category refs #18869
  • lines changed 0, context: html, text, full: html, text
    3ac56bc62209675886a50cc7b6e3aef8ba6702c2 Sun Apr 28 12:56:25 2019 -0700
    eliminating the db= argument everywhere, only need genome= refs #18869
• src/hg/hubApi/tests/expected/err08.gz
  • lines changed 0, context: html, text, full: html, text
    56b3f3c3405aa741906781abc2a65062911f7c10 Tue Apr 23 11:08:48 2019 -0700
    naming tests per their category refs #18869
  • lines changed 0, context: html, text, full: html, text
    3ac56bc62209675886a50cc7b6e3aef8ba6702c2 Sun Apr 28 12:56:25 2019 -0700
    eliminating the db= argument everywhere, only need genome= refs #18869
• src/hg/hubApi/tests/expected/err09.gz
  • lines changed 0, context: html, text, full: html, text
    56b3f3c3405aa741906781abc2a65062911f7c10 Tue Apr 23 11:08:48 2019 -0700
    naming tests per their category refs #18869
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    3ac56bc62209675886a50cc7b6e3aef8ba6702c2 Sun Apr 28 12:56:25 2019 -0700
    eliminating the db= argument everywhere, only need genome= refs #18869
• src/hg/hubApi/tests/expected/err10.gz
  • lines changed 0, context: html, text, full: html, text
    56b3f3c3405aa741906781abc2a65062911f7c10 Tue Apr 23 11:08:48 2019 -0700
    naming tests per their category refs #18869
  • lines changed 0, context: html, text, full: html, text
    3ac56bc62209675886a50cc7b6e3aef8ba6702c2 Sun Apr 28 12:56:25 2019 -0700
    eliminating the db= argument everywhere, only need genome= refs #18869
• src/hg/hubApi/tests/expected/err11.gz
  • lines changed 0, context: html, text, full: html, text
    56b3f3c3405aa741906781abc2a65062911f7c10 Tue Apr 23 11:08:48 2019 -0700
    naming tests per their category refs #18869
  • lines changed 0, context: html, text, full: html, text
    00242398ac1f441ac8d41eff3b020ff431d81c55 Tue Apr 23 13:05:29 2019 -0700
    now covering all error exits in hubApi.c refs #18869
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    3ac56bc62209675886a50cc7b6e3aef8ba6702c2 Sun Apr 28 12:56:25 2019 -0700
    eliminating the db= argument everywhere, only need genome= refs #18869
• src/hg/hubApi/tests/expected/err12.gz
  • lines changed 0, context: html, text, full: html, text
    00242398ac1f441ac8d41eff3b020ff431d81c55 Tue Apr 23 13:05:29 2019 -0700
    now covering all error exits in hubApi.c refs #18869
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    3ac56bc62209675886a50cc7b6e3aef8ba6702c2 Sun Apr 28 12:56:25 2019 -0700
    eliminating the db= argument everywhere, only need genome= refs #18869
• src/hg/hubApi/tests/expected/err13.gz
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    00242398ac1f441ac8d41eff3b020ff431d81c55 Tue Apr 23 13:05:29 2019 -0700
    now covering all error exits in hubApi.c refs #18869
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    3ac56bc62209675886a50cc7b6e3aef8ba6702c2 Sun Apr 28 12:56:25 2019 -0700
    eliminating the db= argument everywhere, only need genome= refs #18869
• src/hg/hubApi/tests/expected/err14.gz
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    00242398ac1f441ac8d41eff3b020ff431d81c55 Tue Apr 23 13:05:29 2019 -0700
    now covering all error exits in hubApi.c refs #18869
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    3ac56bc62209675886a50cc7b6e3aef8ba6702c2 Sun Apr 28 12:56:25 2019 -0700
    eliminating the db= argument everywhere, only need genome= refs #18869
• src/hg/hubApi/tests/expected/err15.gz
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    00242398ac1f441ac8d41eff3b020ff431d81c55 Tue Apr 23 13:05:29 2019 -0700
    now covering all error exits in hubApi.c refs #18869
• src/hg/hubApi/tests/expected/err16.gz
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    00242398ac1f441ac8d41eff3b020ff431d81c55 Tue Apr 23 13:05:29 2019 -0700
    now covering all error exits in hubApi.c refs #18869
• src/hg/hubApi/tests/expected/err17.gz
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    d92ba8d3eb476aeeaaa7a52cf097bb8b3ba6ba46 Wed Apr 24 14:30:00 2019 -0700
    all errors checked in list function refs #18869
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    3ac56bc62209675886a50cc7b6e3aef8ba6702c2 Sun Apr 28 12:56:25 2019 -0700
    eliminating the db= argument everywhere, only need genome= refs #18869
• src/hg/hubApi/tests/expected/err18.gz
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    d92ba8d3eb476aeeaaa7a52cf097bb8b3ba6ba46 Wed Apr 24 14:30:00 2019 -0700
    all errors checked in list function refs #18869
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    e5472e5f07d3fed44a004132b3b9bb3da2b7365c Fri Apr 26 22:57:02 2019 -0700
    correctly exit when specified genome is not found in hub for list/chromosomes function refs #18869
• src/hg/hubApi/tests/expected/err19.gz
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    d92ba8d3eb476aeeaaa7a52cf097bb8b3ba6ba46 Wed Apr 24 14:30:00 2019 -0700
    all errors checked in list function refs #18869
• src/hg/hubApi/tests/expected/err20.gz
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    d92ba8d3eb476aeeaaa7a52cf097bb8b3ba6ba46 Wed Apr 24 14:30:00 2019 -0700
    all errors checked in list function refs #18869
• src/hg/hubApi/tests/expected/err21.gz
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    d92ba8d3eb476aeeaaa7a52cf097bb8b3ba6ba46 Wed Apr 24 14:30:00 2019 -0700
    all errors checked in list function refs #18869
• src/hg/hubApi/tests/expected/err22.gz
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    d92ba8d3eb476aeeaaa7a52cf097bb8b3ba6ba46 Wed Apr 24 14:30:00 2019 -0700
    all errors checked in list function refs #18869
• src/hg/hubApi/tests/expected/err23.gz
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    d92ba8d3eb476aeeaaa7a52cf097bb8b3ba6ba46 Wed Apr 24 14:30:00 2019 -0700
    all errors checked in list function refs #18869
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    3ac56bc62209675886a50cc7b6e3aef8ba6702c2 Sun Apr 28 12:56:25 2019 -0700
    eliminating the db= argument everywhere, only need genome= refs #18869
• src/hg/hubApi/tests/expected/err24.gz
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    d92ba8d3eb476aeeaaa7a52cf097bb8b3ba6ba46 Wed Apr 24 14:30:00 2019 -0700
    all errors checked in list function refs #18869
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    3ac56bc62209675886a50cc7b6e3aef8ba6702c2 Sun Apr 28 12:56:25 2019 -0700
    eliminating the db= argument everywhere, only need genome= refs #18869
• src/hg/hubApi/tests/expected/err25.gz
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    d92ba8d3eb476aeeaaa7a52cf097bb8b3ba6ba46 Wed Apr 24 14:30:00 2019 -0700
    all errors checked in list function refs #18869
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    3ac56bc62209675886a50cc7b6e3aef8ba6702c2 Sun Apr 28 12:56:25 2019 -0700
    eliminating the db= argument everywhere, only need genome= refs #18869
• src/hg/hubApi/tests/expected/err26.gz
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    d92ba8d3eb476aeeaaa7a52cf097bb8b3ba6ba46 Wed Apr 24 14:30:00 2019 -0700
    all errors checked in list function refs #18869
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    d90127bb93b9132b15716eb336dcc8942f9cad43 Wed Apr 24 16:13:58 2019 -0700
    adding some getData error tests refs #18869
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    c48d89f70aab36ec2f20dcfc13a55dd2c703de15 Sun Apr 28 14:01:58 2019 -0700
    fixup errors to be independent of server refs #18869
• src/hg/hubApi/tests/expected/err27.gz
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    d90127bb93b9132b15716eb336dcc8942f9cad43 Wed Apr 24 16:13:58 2019 -0700
    adding some getData error tests refs #18869
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    c48d89f70aab36ec2f20dcfc13a55dd2c703de15 Sun Apr 28 14:01:58 2019 -0700
    fixup errors to be independent of server refs #18869
• src/hg/hubApi/tests/expected/err28.gz
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    d90127bb93b9132b15716eb336dcc8942f9cad43 Wed Apr 24 16:13:58 2019 -0700
    adding some getData error tests refs #18869
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    c48d89f70aab36ec2f20dcfc13a55dd2c703de15 Sun Apr 28 14:01:58 2019 -0700
    fixup errors to be independent of server refs #18869
• src/hg/hubApi/tests/expected/err29.gz
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    e5472e5f07d3fed44a004132b3b9bb3da2b7365c Fri Apr 26 22:57:02 2019 -0700
    correctly exit when specified genome is not found in hub for list/chromosomes function refs #18869
• src/hg/hubApi/tests/expected/getSeq01.gz
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    56b3f3c3405aa741906781abc2a65062911f7c10 Tue Apr 23 11:08:48 2019 -0700
    naming tests per their category refs #18869
• src/hg/hubApi/tests/expected/getSeq02.gz
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    e5472e5f07d3fed44a004132b3b9bb3da2b7365c Fri Apr 26 22:57:02 2019 -0700
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    df10c2a997dd6578f49113d97109816d9eaaee03 Wed Apr 24 10:04:24 2019 -0700
    Adding checks for hub and genome description pages and fixing incorrect error message when composite/superTracks have no children, refs #18870
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    781ab6c4fc3af29965c301695d7f70309565843b Mon Apr 29 10:36:15 2019 -0700
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    b5e12ed0634ff8bb800f24592f4651b1dc7ec43d Thu Apr 25 05:20:52 2019 -0700
    changing borders between nucleotides when zooming/highlighting, refs #23349
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    8fe5712649e5da23ba5e4a0416fbea08fa75451a Tue Apr 23 17:04:45 2019 -0700
    Fix UI matrix bug ignoring subgroup members > 256. refs #23366
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    e9613abf0343d28fef3319619d86ae882f0c85d2 Wed Apr 24 11:11:33 2019 -0700
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    49ed0c54f0be428a7c3d694e90a36fdeb8fe0f07 Thu Apr 25 10:02:32 2019 -0700
    Up subgroup member size again, to 1000. Add friendlier user notification. refs #23366
• src/hg/lib/trackHub.c
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    df10c2a997dd6578f49113d97109816d9eaaee03 Wed Apr 24 10:04:24 2019 -0700
    Adding checks for hub and genome description pages and fixing incorrect error message when composite/superTracks have no children, refs #18870
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    ee8604b058c54258d4df132d0fee8b9077d195c3 Wed Apr 24 16:48:15 2019 -0700
    Woops forgot about views, refs #13428
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    c3dafa814071aa2918bfb8a5f1cacb72b6495408 Mon Apr 22 17:14:04 2019 -0700
    doc for gdcCancer and a tweak to hgTracks
• src/hg/makeDb/genbank/etc/hgwbeta.dbs
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    0344e3e4f85edb4049c6c4247ea8ebb37fdfa47e Fri Apr 26 11:16:42 2019 -0700
    adding felCat9 to hgwbeta.dbs, refs #21043
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    206a2b570ab9d95ca966fab4ad4d0c58b2d53f83 Tue Apr 23 15:36:46 2019 -0700
    adding documentation for AA profile track refs #19937
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    7c80920e7168fde831cc5e5b9dfd7e398a331c95 Wed Apr 24 12:02:40 2019 -0700
    edits and additions to html page for aaCounts track
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    ecb88f76613634fd46660785dbae12b1dd868727 Tue Apr 23 14:32:27 2019 -0700
    adding documentation for protein blat composites refs #19937
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    0fbaaef288264ab6cda8c6acbf3b87ec08b21a38 Wed Apr 24 13:00:21 2019 -0700
    spruced up the proteinBlat descriptions for Staph aureus
• src/hg/makeDb/trackDb/criGri/criGri1/crispr.html
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    284bad432a59211f904cec1488260164f81ff952 Mon Apr 29 09:15:41 2019 -0700
    Updating http to https for criGri1, uiLinks cronjob.
• src/hg/makeDb/trackDb/gator/allMis1/trackDb.ra
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    cdfc737681161b105eca1bf11628d84ccba47500 Fri Apr 26 10:40:31 2019 -0700
    Moving the genscan track to the 3rd position in the Genes and Gene Predictions section, no Redmine.
• src/hg/makeDb/trackDb/genscan.html
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    915a13561ba56819d0cc8fad2c8ea00342d5e933 Wed Apr 24 09:44:02 2019 -0700
    Updating broken genscan links for echTel1, uiLinks cronjob.
• src/hg/makeDb/trackDb/marmoset/calJac3/cons13way.html
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    9d182d8f19a681f74f5371ed6dfe2448606bfa36 Thu Apr 25 15:02:23 2019 -0700
    Updating http to https for calJac3, uiLinks cronjob.
• src/hg/makeDb/trackDb/tagTypes.tab
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    0b44b1cb083ced718d9e7fa9a2ee10693dd15607 Tue Apr 23 15:56:31 2019 -0700
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• src/hg/makeDb/trackDb/transMapTailer.html
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    cb5d901d0f72940e7170a139e44b021121e64412 Tue Apr 23 09:33:54 2019 -0700
    Updating http to https for panTro5, uiLinks cronjob.
• src/hg/near/hgMapToGene/hgMapToGene.c
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    8412e8481387a7f9489f156bf091c84eee44ba98 Mon Apr 22 18:19:25 2019 -0700
    missed a place where indexs where limited to 16 charqcters, which breaks on Gencode genes
• src/hg/utils/bedToPsl/bedToPsl.c
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    2b7b5ede61bcbc412ea08e4110a726709b8a4d7c Wed Apr 24 11:49:44 2019 -0700
    add a -tabs option to bedToPsl to parse TSV files
• src/hg/utils/hubCheck/hubCheck.c
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    df10c2a997dd6578f49113d97109816d9eaaee03 Wed Apr 24 10:04:24 2019 -0700
    Adding checks for hub and genome description pages and fixing incorrect error message when composite/superTracks have no children, refs #18870
• src/inc/srcVersion.h
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    781ab6c4fc3af29965c301695d7f70309565843b Mon Apr 29 10:36:15 2019 -0700
    New version number v381
• src/utils/cancerMafToBigBed
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    7c0d137acafd9e780b872808a80b320564579944 Mon Apr 22 14:54:22 2019 -0700
    some tweaks to get the format more in keeping with what hgc wants
• src/utils/qa/weeklybld/buildEnv.csh
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    0d3d314e8f3984eef72df534b2e3f97d54fe3de1 Mon Apr 29 10:26:28 2019 -0700
    v381 final build, refs #23326

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