Commits for kate

v382_preview2 to v382_base (2019-05-13 to 2019-05-20) v382

5bcbbd0c26d71a17b7eae9f8a138f0e4e47ea67b Mon May 13 16:53:13 2019 -0700

• Split tracks into .new.ra and .dev.ra to facilitate staging alpha, beta and not interfere with public tracks. refs #21139
  • src/hg/makeDb/doc/encode3/tfbs.txt - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/encode3.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 18, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.dev.ra - lines changed 92, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.new.ra - lines changed 531, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.ra - lines changed 87, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSuper.release2.new.ra - lines changed 75, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/encode3.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.wgEncode.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeReg.dev.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeReg.new.ra - lines changed 3, context: html, text, full: html, text

c8f4a96b455efcc2a2c5cf0217244c438aeb9e23 Mon May 13 17:55:37 2019 -0700

• Add ENCODE 2 cell colors to tracks (affects about half the tracks). refs #23243
  • src/hg/makeDb/trackDb/human/hg19/encode3.ra - lines changed 694, context: html, text, full: html, text

7b3269bd1e75158ddf049cd109f7f4e1383da0ec Tue May 14 10:36:23 2019 -0700

• Color subtracks by DNase similarity. refs #23243
  • src/hg/makeDb/doc/encode3/tfbs.txt - lines changed 40, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/encode3.ra - lines changed 835, context: html, text, full: html, text

1b23d9f5faffda6287912933d04112b5461b46be Wed May 15 10:04:22 2019 -0700

• Revert menu item for Cell Browser, to original (remove 'Single', added 2/6/19). Request by AnnZ. refs #22679
  • src/hg/htdocs/inc/globalNavBar.inc - lines changed 1, context: html, text, full: html, text

17a0041ba1ccccb438ab59855538e53d0f78e0f9 Wed May 15 14:17:06 2019 -0700

• Final polish: 1. Set default on tracks. 2. Fix some uniqueness problems with shortLabels and colors.
  • src/hg/makeDb/doc/encode3/tfbs.txt - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/encode3.ra - lines changed 44, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/encode3.ra - lines changed 46, context: html, text, full: html, text

5948426ec1f630f4aa6d40ec40b87ae6ad2a13fb Wed May 15 14:35:33 2019 -0700

• Add informational paragraph (JK request) and notes about subtrack coloring. refs #23243
  • src/hg/makeDb/trackDb/human/encTfChipPk.html - lines changed 22, context: html, text, full: html, text

53e7415427718eb301c604850ae155d739c84bf7 Wed May 15 15:53:23 2019 -0700

• Removing useless warning. refs #23480
  • src/hg/lib/hui.c - lines changed 1, context: html, text, full: html, text

61b98e84a58f8049465452e435fa9b6048777bf5 Thu May 16 11:52:43 2019 -0700

• Add track tables for ENCODE 3 TFBS Clusters track. refs #21139
  • src/hg/lib/clusterInputTrackTableEncode3Tfbs.as - lines changed 11, context: html, text, full: html, text
  • src/hg/lib/clusterInputTrackTableEncode3Tfbs.sql - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/doc/encode3/tfbs.txt - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/schema/all.joiner - lines changed 16, context: html, text, full: html, text

a00c068d76b7c6c65d98ed95864171a8dfac75ef Fri May 17 13:28:02 2019 -0700

• Fix poorly behaving UI checkboxes (broken on previous purported cleanup. refs #23507
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 6, context: html, text, full: html, text